chr4 : 56,506,094 – 56,506,737
643 bp 91 TFs 1 linked gene
This 643 bp open chromatin element is linked to ARL9 and is bound by 91 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARL9 304 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:56,501,094 – 56,511,737
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 549 bp overlap
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 174 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 50 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 506 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 80 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 471 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 572 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 424 bp overlap
ChIP RKO GSE47190.BRD1.RKO 133 bp overlap
BRD2 2 datasets
ChIP K-562_IBET151_50nM GSE120715.BRD2.K-562_IBET151_50nM 121 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 144 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 161 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 152 bp overlap
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 354 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 283 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 215 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 525 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 551 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 413 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 230 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 150 bp overlap
CREM 2 datasets
ChIP WTC11 ENCFF209ZUE 83 bp overlap
ChIP WTC11 ENCFF209ZUE 434 bp overlap
CTCF 4 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 103 bp overlap
ChIP astrocyte ENCFF558APA 120 bp overlap
ChIP astrocyte ENCFF558APA 381 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DDX5 2 datasets
ChIP NTERA2 GSE58641.DDX5.NTERA2 98 bp overlap
ChIP NTERA2 GSE58641.DDX5.NTERA2 60 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 458 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 93 bp overlap
EP300 1 dataset
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 96 bp overlap
ESR1 5 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 226 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 270 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 280 bp overlap
ChIP breast_tumor_Male_22 GSE104399.ESR1.breast_tumor_Male_22 182 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 314 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 188 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 139 bp overlap
EZH2 9 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 581 bp overlap
ChIP H1 ENCFF232NZA 551 bp overlap
ChIP H1 ENCFF232NZA 643 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 318 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 643 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 535 bp overlap
ChIP neural progenitor cell ENCFF018MKA 223 bp overlap
ChIP neural progenitor cell ENCFF018MKA 520 bp overlap
ChIP neural progenitor cell ENCFF472NFV 239 bp overlap
FOSL2 1 dataset
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 214 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 115 bp overlap
FOXK2 1 dataset
ChIP Hep-G2 ENCSR171FUX.FOXK2.Hep-G2 89 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 384 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 138 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 308 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 211 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 206 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 153 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 601 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 423 bp overlap
IKZF1 2 datasets
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 159 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 306 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 290 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 578 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 290 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 309 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 390 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 201 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 136 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 59 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 90 bp overlap
KMT2A 1 dataset
ChIP RS4-11 GSE38403.KMT2A.RS4-11 149 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 188 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 146 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 201 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 64 bp overlap
MYBL2 1 dataset
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 431 bp overlap
MYCN 2 datasets
ChIP BE2C GSE80151.MYCN.BE2C 300 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 300 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 282 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 131 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 641 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 250 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 332 bp overlap
POLR2A 5 datasets
ChIP HCT116 ENCFF508RDJ 330 bp overlap
ChIP PFSK-1 ENCFF576NIT 295 bp overlap
ChIP SK-N-MC ENCFF088IVG 330 bp overlap
ChIP erythroblast ENCFF498VMR 230 bp overlap
ChIP transverse colon ENCFF193UMS 143 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 195 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 346 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 304 bp overlap
PRMT3 1 dataset
ChIP HepG2 ENCFF257VCG 351 bp overlap
RAD21 2 datasets
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 189 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 271 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 406 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 237 bp overlap
REST 3 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 124 bp overlap
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 155 bp overlap
RNF2 3 datasets
ChIP WA09 GSE105028.RNF2.WA09 483 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 305 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 508 bp overlap
RUNX1-RUNX1T1 1 dataset
ChIP AML GSE131939.RUNX1-RUNX1T1.AML 132 bp overlap
RUNX1T1 3 datasets
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 174 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 547 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 244 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 597 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 215 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 184 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 216 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 290 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 162 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 67 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 625 bp overlap
SMARCA4 7 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 107 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 467 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 54 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 370 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 276 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 506 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 185 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 315 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 235 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 233 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 177 bp overlap
SSRP1 1 dataset
ChIP HepG2 ENCFF540BLL 257 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 195 bp overlap
SUPT5H 5 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 354 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 152 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 145 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 206 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 643 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 398 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 281 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 232 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 445 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 194 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 223 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 81 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 62 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 145 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 203 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 225 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 259 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 66 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 230 bp overlap
USF2 3 datasets
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 142 bp overlap
ChIP K-562 GSE111469.USF2.K-562 175 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 381 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 147 bp overlap
ChIP HepG2 ENCFF016NZF 51 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 171 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 93 bp overlap
ZNF512 2 datasets
ChIP HepG2 ENCFF113IGR 108 bp overlap
ChIP WTC11 ENCFF086TTM 162 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 137 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 56 bp overlap
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