chr4 : 13,483,098 – 13,483,406

308 bp 100 TFs 1 linked gene

This 308 bp open chromatin element is linked to RAB28 and is bound by 100 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
RAB28		933 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

100 transcription factors

AHR 1 dataset

ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 229 bp overlap

AR 1 dataset

ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 202 bp overlap

ARNT 1 dataset

ChIP A-549 GSE85352.ARNT.A-549 305 bp overlap

ARNTL 1 dataset

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 54 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 254 bp overlap

BRD1 2 datasets

ChIP HUES-64 GSE104059.BRD1.HUES-64 251 bp overlap

ChIP RKO GSE47190.BRD1.RKO 308 bp overlap

BRD2 3 datasets

ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 158 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 196 bp overlap

ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 231 bp overlap

BRD3 3 datasets

ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 233 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 212 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 206 bp overlap

BRD4 4 datasets

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 226 bp overlap

ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 185 bp overlap

ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 308 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 88 bp overlap

CEBPB 1 dataset

ChIP monocyte GSE31621.CEBPB.monocyte 100 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 264 bp overlap

CSNK2A1 1 dataset

ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 177 bp overlap

CTCF 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 86 bp overlap

E2F1 1 dataset

ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 91 bp overlap

ELF3 3 datasets

ChIP PDAC GSE64557.ELF3.PDAC 64 bp overlap

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 236 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 151 bp overlap

ERG 1 dataset

ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 81 bp overlap

ESR1 1 dataset

ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 215 bp overlap

FOXA1 20 datasets

ChIP 22Rv1 GSE96652.FOXA1.22Rv1 202 bp overlap

ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 93 bp overlap

ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 185 bp overlap

ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 121 bp overlap

ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 144 bp overlap

ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 167 bp overlap

ChIP MCF-7 GSE140185.FOXA1.MCF-7 128 bp overlap

ChIP MCF-7 ERP000380.FOXA1.MCF-7 118 bp overlap

ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 148 bp overlap

ChIP PDAC GSE64557.FOXA1.PDAC 156 bp overlap

ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 91 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 71 bp overlap

ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 107 bp overlap

ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 166 bp overlap

ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 130 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 118 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 126 bp overlap

ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 97 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 75 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 147 bp overlap

FOXA2 1 dataset

ChIP PANC-1 GSE119930.FOXA2.PANC-1 182 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 2 datasets

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

ChIP K-562 ENCSR302AWT.FOXK2.K-562 119 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 117 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 2 datasets

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

HBP1 1 dataset

ChIP Hep-G2 ENCSR616WEG.HBP1.Hep-G2 114 bp overlap

HDAC1 1 dataset

ChIP K-562 ENCSR711VWL.HDAC1.K-562 237 bp overlap

HDAC2 2 datasets

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 127 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 119 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 220 bp overlap

HIF1A 1 dataset

ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 222 bp overlap

HNRNPH1 1 dataset

ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 189 bp overlap

HOXB13 1 dataset

ChIP LNCaP GSE56288.HOXB13.LNCaP 174 bp overlap

IKZF1 4 datasets

ChIP K-562 ENCSR395HWC.IKZF1.K-562 216 bp overlap

ChIP K562 ENCFF348IBL 218 bp overlap

ChIP K562 ENCFF348IBL 308 bp overlap

ChIP K562 ENCFF771OHZ 169 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 205 bp overlap

KAT7 1 dataset

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 308 bp overlap

KDM1A 1 dataset

ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 221 bp overlap

KMT2A 3 datasets

ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 270 bp overlap

ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 225 bp overlap

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 292 bp overlap

KMT2B 1 dataset

ChIP HEK293T_C-term_C49 GSE90762.KMT2B.HEK293T_C-term_C49 201 bp overlap

MAFB 1 dataset

ChIP islet ERP004003.MAFB.islet 131 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 180 bp overlap

MXI1 2 datasets

ChIP SK-N-SH ENCFF746HVJ 308 bp overlap

ChIP SK-N-SH ENCFF746HVJ 67 bp overlap

MYC 1 dataset

ChIP SK-N-AS GSE138295.MYC.SK-N-AS 70 bp overlap

MYCN 1 dataset

ChIP RH4 GSE83726.MYCN.RH4 184 bp overlap

MYF6 1 dataset

Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap

MZF1 1 dataset

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 308 bp overlap

NR3C1 1 dataset

ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 74 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 241 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 193 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 302 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 161 bp overlap

PKNOX1 3 datasets

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

ChIP HEK293T ENCFF174WDB 225 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 97 bp overlap

POLR2A 1 dataset

ChIP K562 ENCFF514URW 191 bp overlap

PRDM10 1 dataset

ChIP HEK293 ENCFF145WQQ 135 bp overlap

RAD21 4 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 308 bp overlap

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 269 bp overlap

ChIP RH4 GSE83726.RAD21.RH4 231 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 308 bp overlap

RBBP5 1 dataset

ChIP K-562 ENCSR000AQI.RBBP5.K-562 212 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 279 bp overlap

RNF2 2 datasets

ChIP H1 ENCFF239FFS 308 bp overlap

ChIP H1 ENCFF239FFS 64 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 300 bp overlap

RYBP 1 dataset

ChIP WA01 GSE104690.RYBP.WA01 152 bp overlap

SAP30 3 datasets

ChIP K-562 ENCSR000AQJ.SAP30.K-562 162 bp overlap

ChIP K562 ENCFF652WJB 308 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 134 bp overlap

SCRT1 3 datasets

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

ChIP HEK293 ENCFF513YVP 215 bp overlap

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 185 bp overlap

SCRT2 2 datasets

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

ChIP HEK293 ENCFF711QQB 236 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 282 bp overlap

SMARCA4 7 datasets

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 242 bp overlap

ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 145 bp overlap

ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 74 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 136 bp overlap

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 219 bp overlap

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 140 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 161 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 247 bp overlap

SMC3 2 datasets

ChIP neural ENCSR404BPV.SMC3.neural 73 bp overlap

ChIP neural cell ENCFF795YGY 177 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 234 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 160 bp overlap

SP140L 1 dataset

ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 134 bp overlap

SPI1 1 dataset

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 172 bp overlap

STAT3 3 datasets

ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 160 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 202 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 215 bp overlap

SUZ12 1 dataset

ChIP H1 ENCFF881NFR 242 bp overlap

TBP 2 datasets

ChIP K-562 GSE55306.TBP.K-562 258 bp overlap

ChIP hESC GSE122298.TBP.hESC 52 bp overlap

YY1 1 dataset

ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 294 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 170 bp overlap

ZBTB40 1 dataset

ChIP K-562 ENCSR237VLT.ZBTB40.K-562 139 bp overlap

ZBTB7A 1 dataset

ChIP K-562 GSE103445.ZBTB7A.K-562 270 bp overlap

ZFP64 1 dataset

ChIP HEK293 GSE76494.ZFP64.HEK293 308 bp overlap

ZKSCAN2 1 dataset

ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 231 bp overlap

ZKSCAN5 1 dataset

ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 224 bp overlap

ZNF24 7 datasets

ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 188 bp overlap

ChIP K-562 ENCSR099NCH.ZNF24.K-562 308 bp overlap

ChIP K-562 ENCSR695EQB.ZNF24.K-562 308 bp overlap

ChIP K-562 ENCSR117WTM.ZNF24.K-562 201 bp overlap

ChIP K562 ENCFF497GLV 291 bp overlap

ChIP K562 ENCFF615YYW 308 bp overlap

ChIP K562 ENCFF877JCX 308 bp overlap

ZNF425 1 dataset

ChIP HEK293T GSE78099.ZNF425.HEK293T 162 bp overlap

ZNF501 1 dataset

ChIP HepG2 ENCFF879XZR 308 bp overlap

ZNF561 1 dataset

ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 213 bp overlap

ZNF580 1 dataset

ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 277 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 228 bp overlap

ZNF695 1 dataset

ChIP HEK293T GSE78099.ZNF695.HEK293T 123 bp overlap

ZSCAN16 1 dataset

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 184 bp overlap

ZXDB 1 dataset

ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 294 bp overlap