chr3 : 187,519,296 187,519,903
607 bp 96 TFs 0 linked genes
This 607 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:187,514,296 – 187,524,903
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 293 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 293 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
ATF2 3 datasets
ChIP H1 ENCFF295GZO 353 bp overlap
ChIP H1 ENCFF295GZO 151 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 205 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 229 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 188 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 230 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 230 bp overlap
BRD4 3 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 283 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 283 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 185 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 250 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 409 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 237 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 207 bp overlap
ChIP H1 ENCFF955PMP 263 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 307 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 274 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 180 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 114 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 607 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 299 bp overlap
EP300 3 datasets
ChIP AML GSE131939.EP300.AML 116 bp overlap
ChIP H1 ENCFF927IYK 246 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 200 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ETV3 2 datasets
Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap
Motif ES_0h ES_0h-ETV3_MA0763.2 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 334 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 383 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 326 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 315 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 211 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 161 bp overlap
FOSL2 5 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 174 bp overlap
ChIP NPC GSE122631.FOSL2.NPC 191 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 129 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 225 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 163 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 361 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 120 bp overlap
GATA6 2 datasets
ChIP AGS GSE51936.GATA6.AGS 86 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 307 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 185 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 165 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 343 bp overlap
ChIP K562 ENCFF348IBL 315 bp overlap
ChIP K562 ENCFF771OHZ 394 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 10 datasets
ChIP BT-549 GSE46166.JUN.BT-549 165 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 362 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 273 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 513 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 420 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 437 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 321 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 346 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 360 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 501 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 220 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 228 bp overlap
MAFF 5 datasets
ChIP HeLa-S3 ENCFF783SBT 277 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 123 bp overlap
ChIP HepG2 ENCFF452YUT 277 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 198 bp overlap
ChIP K562 ENCFF071YKK 281 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 397 bp overlap
MAFK 8 datasets
ChIP A549 ENCFF371EPR 111 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
ChIP IMR-90 ENCFF336DHZ 271 bp overlap
ChIP K-562 ENCSR000EGX.MAFK.K-562 145 bp overlap
ChIP MCF-7 ENCFF558JLG 361 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 280 bp overlap
MED1 5 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 239 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 339 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 311 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 286 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 328 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 260 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 363 bp overlap
MYCN 1 dataset
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 124 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 176 bp overlap
ChIP H1 ENCFF747ZPQ 183 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 506 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 317 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 607 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 498 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 413 bp overlap
ChIP hESC GSE18292.NANOG.hESC 148 bp overlap
ChIP hESC GSE20650.NANOG.hESC 130 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 297 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 218 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 254 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 254 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 228 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 127 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 153 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 200 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 302 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 390 bp overlap
ChIP SK-N-MC ENCFF088IVG 482 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 176 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 318 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 181 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 591 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 510 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 150 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 270 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 476 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 274 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 261 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 234 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 141 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 243 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 239 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 127 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 368 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 479 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 373 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 402 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 543 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 430 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 281 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 532 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 495 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 328 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 353 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 317 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 290 bp overlap
SMARCA2 6 datasets
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 211 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 179 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 268 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 204 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 372 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCA2.SK-N-MC_shGFP 331 bp overlap
SMARCA4 5 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 291 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 315 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 320 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 360 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 426 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 424 bp overlap
SMARCC1 7 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 223 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 491 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 427 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 314 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 95 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 301 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 275 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 275 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 275 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 454 bp overlap
ChIP hESC GSE18292.SOX2.hESC 144 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 300 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 239 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 243 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 289 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 168 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 196 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 186 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 255 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 297 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 147 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 228 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 198 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 123 bp overlap
TEAD1 6 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 163 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 283 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 303 bp overlap
ChIP WTC11 ENCFF502QUV 327 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 272 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 11 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 237 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 220 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 234 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 362 bp overlap
ChIP H1 ENCFF778PAX 186 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 118 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 238 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 237 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 191 bp overlap
ChIP WTC11 ENCFF114TZS 293 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 270 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 4 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 258 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 457 bp overlap
YAP1 2 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 165 bp overlap
ChIP WA01 GSE99202.YAP1.WA01 301 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 225 bp overlap
YY1AP1 1 dataset
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 240 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 310 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 350 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 239 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 242 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 192 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 293 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap