chr3 : 173,920,468 173,920,882
414 bp 108 TFs 1 linked gene
This 414 bp open chromatin element is linked to NLGN1-AS1 and is bound by 108 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NLGN1-AS1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:173,915,468 – 173,925,882
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AR 38 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 140 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 183 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 149 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 87 bp overlap
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 55 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 94 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 136 bp overlap
ChIP LNCaP GSE80256.AR.LNCaP 233 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 146 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 68 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 70 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 148 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 178 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 132 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 85 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 84 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 152 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 113 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 165 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 168 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 104 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 174 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 135 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 125 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 175 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 136 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 338 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 108 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 75 bp overlap
ChIP VCaP_R1881 GSE79128.AR.VCaP_R1881 138 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 140 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 144 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 128 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 212 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 188 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 55 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 64 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 96 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 114 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 182 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 282 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 290 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
BRD3 1 dataset
ChIP MM1-S GSE43743.BRD3.MM1-S 297 bp overlap
BRD4 11 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 196 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 180 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 414 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 414 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 414 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 414 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 411 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 414 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 414 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 414 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 221 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 119 bp overlap
CDK8 1 dataset
ChIP MM1-S GSE43743.CDK8.MM1-S 328 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 414 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 360 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 307 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 335 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 370 bp overlap
CTCF 4 datasets
ChIP MM.1S ENCFF869JMQ 394 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 326 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 172 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 202 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 209 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 130 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 148 bp overlap
ESR1 1 dataset
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 105 bp overlap
FOS 9 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 414 bp overlap
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP IMR-90 ENCFF179EDA 272 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 163 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 182 bp overlap
ChIP MCF-7 ENCFF282FWZ 125 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 264 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 320 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 328 bp overlap
FOSL1 3 datasets
ChIP 143B GSE74230.FOSL1.143B 220 bp overlap
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 278 bp overlap
FOSL2 4 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 177 bp overlap
ChIP SK-N-SH ENCFF127ZDW 276 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 131 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 414 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 279 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 162 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 113 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 72 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 383 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 325 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 143 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 143 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 51 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 107 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 107 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 341 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 357 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 332 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 148 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 377 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.JUN.HUVEC-C_VEGF_1h 169 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 208 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 292 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 248 bp overlap
JUNB 4 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 414 bp overlap
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 148 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 156 bp overlap
JUND 11 datasets
ChIP Calu-3 GSE85401.JUND.Calu-3 147 bp overlap
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 226 bp overlap
ChIP HeLa-S3 ENCFF642OHL 302 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 189 bp overlap
ChIP SK-N-SH ENCFF551NEQ 262 bp overlap
ChIP SK-N-SH ENCFF971JKN 250 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 222 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 140 bp overlap
ChIP T-47D ENCSR000BVO.JUND.T-47D 149 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 175 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 166 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 193 bp overlap
MAX 1 dataset
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 135 bp overlap
MED1 6 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 339 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 414 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 261 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 290 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 414 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 335 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 246 bp overlap
MEF2C 2 datasets
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 226 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 225 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 414 bp overlap
NCOR2 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 239 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 91 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 228 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NR3C1 5 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 103 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 215 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 171 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 74 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 51 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 226 bp overlap
PGR 6 datasets
ChIP HUVEC-C_PR_PROGESTERON GSE43786.PGR.HUVEC-C_PR_PROGESTERON 162 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 184 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 190 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 102 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 148 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 168 bp overlap
PKNOX1 4 datasets
ChIP GM12878 ENCFF589FCY 318 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 272 bp overlap
ChIP HEK293T ENCFF174WDB 288 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 263 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 194 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 211 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 154 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 247 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 65 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 92 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 72 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 334 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 159 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 239 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 348 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 317 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 196 bp overlap
ChIP HCT116 ENCFF038POZ 280 bp overlap
ChIP HCT116 ENCFF038POZ 295 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 173 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 224 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 295 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 239 bp overlap
ZNF224 1 dataset
ChIP HEK293 GSE76494.ZNF224.HEK293 176 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 128 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap