chr3 : 167,653,562 – 167,654,085
523 bp 103 TFs 1 linked gene
This 523 bp open chromatin element is linked to WDR49 and is bound by 103 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
WDR49 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:167,648,562 – 167,659,085
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 201 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 523 bp overlap
ChIP H1 ENCFF399KAM 523 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 523 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 235 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 181 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BRD3 3 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 223 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 174 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 334 bp overlap
BRD4 11 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 523 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 265 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 220 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 349 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 343 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 281 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 136 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 398 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 523 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 279 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 212 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CDK8 3 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 373 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 523 bp overlap
ChIP MV4-11 GSE65138.CDK8.MV4-11 305 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 523 bp overlap
CEBPB 1 dataset
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 206 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 354 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 288 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 186 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 330 bp overlap
ChIP H1 ENCFF126NLU 118 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 284 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 315 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 221 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 268 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 257 bp overlap
ChIP hESC GSE17917.EP300.hESC 343 bp overlap
ETV6 1 dataset
Motif ES_0h ES_0h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HOXB13 1 dataset
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 159 bp overlap
Hand1::Tcf3 1 dataset
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
IRF1 1 dataset
ChIP CD14_LPS GSE43036.IRF1.CD14_LPS 174 bp overlap
IRF2 1 dataset
Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap
IRF3 2 datasets
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
IRF4 2 datasets
ChIP B-cell GSE142493.IRF4.B-cell 208 bp overlap
Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap
IRF7 2 datasets
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
IRF8 2 datasets
Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap
ChIP THP-1 GSE123872.IRF8.THP-1 186 bp overlap
IRF9 1 dataset
Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap
Irf1 2 datasets
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 170 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 361 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 172 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 523 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 523 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 151 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 231 bp overlap
MAF::NFE2 1 dataset
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 178 bp overlap
MED1 4 datasets
ChIP AML GSE154985.MED1.AML 372 bp overlap
ChIP MOLM-13 GSE154985.MED1.MOLM-13 318 bp overlap
ChIP MOLM-14 GSE65138.MED1.MOLM-14 311 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 497 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 271 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 253 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 243 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 301 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 228 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 489 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 500 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 231 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 523 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 523 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 331 bp overlap
ChIP hESC GSE18292.NANOG.hESC 318 bp overlap
ChIP hESC GSE20650.NANOG.hESC 261 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 186 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 200 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 523 bp overlap
POLR2A 4 datasets
ChIP H1 ENCFF566JSR 256 bp overlap
ChIP H1 ENCFF770YBQ 424 bp overlap
ChIP H1 ENCFF833NJP 363 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 399 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 399 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 342 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 443 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 225 bp overlap
POU5F1B 1 dataset
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRDM1 3 datasets
ChIP A-549 ENCSR977FEF.PRDM1.A-549 166 bp overlap
ChIP A549 ENCFF012KDW 223 bp overlap
ChIP HEK293 ENCFF302TBP 384 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 362 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 305 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 286 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 359 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 238 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 205 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 435 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 310 bp overlap
RBPJ 3 datasets
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
ChIP GIC GSE79734.RBPJ.GIC 235 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 235 bp overlap
RELA 1 dataset
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 196 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 117 bp overlap
RUNX1 3 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 172 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 132 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 230 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 113 bp overlap
SMAD2 1 dataset
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 6 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 141 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 343 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 301 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 369 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 203 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 297 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 8 datasets
ChIP HNSC GSE69479.SOX2.HNSC 294 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 189 bp overlap
ChIP NPC GSE122631.SOX2.NPC 218 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 158 bp overlap
ChIP hESC GSE18292.SOX2.hESC 340 bp overlap
ChIP hESC GSE69479.SOX2.hESC 220 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 399 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 181 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 149 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 339 bp overlap
SPI1 11 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 158 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 212 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 191 bp overlap
ChIP GM12891 ENCFF563IUT 196 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 159 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 158 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 190 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 166 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 149 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 108 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 101 bp overlap
SPIB 2 datasets
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 202 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 165 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 6 datasets
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 146 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 187 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 140 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 255 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 237 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 143 bp overlap
Spi1 2 datasets
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 435 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 244 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 220 bp overlap
ChIP hESC GSE122298.TBP.hESC 136 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 130 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 201 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 143 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 242 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 188 bp overlap
ZIM3 1 dataset
ChIP HEK293 GSE76494.ZIM3.HEK293 113 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF184 2 datasets
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact