chr3 : 162,741,186 162,741,741
555 bp 126 TFs 0 linked genes
This 555 bp open chromatin element has no linked target genes and is bound by 126 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:162,736,186 – 162,746,741
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
126 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 288 bp overlap
ATF2 4 datasets
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
ChIP H1 ENCFF295GZO 446 bp overlap
ChIP H1 ENCFF295GZO 147 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 331 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 174 bp overlap
CEBPB 3 datasets
Motif ES_0h ES_0h-CEBPB_MA0466.4 10 bp overlap
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 238 bp overlap
CEBPE 1 dataset
Motif ES_0h ES_0h-CEBPE_MA0837.3 10 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA0838.1 10 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 272 bp overlap
ChIP H1 ENCFF126NLU 446 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 258 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 318 bp overlap
CREB1 3 datasets
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 264 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 191 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 158 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 97 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 151 bp overlap
DBP 1 dataset
Motif ES_0h ES_0h-DBP_MA0639.2 10 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 285 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 271 bp overlap
ChIP hESC GSE17917.EP300.hESC 222 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 303 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 193 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif ES_0h ES_0h-ETV2_MA0762.2 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXN3 1 dataset
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 174 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 118 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif ES_0h ES_0h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif ES_0h ES_0h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif ES_0h ES_0h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif ES_0h ES_0h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif ES_0h ES_0h-HOXD11_MA0908.2 9 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 1 dataset
Motif ES_0h ES_0h-Hoxa11_MA0911.2 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 55 bp overlap
ChIP SK-N-SH ENCFF285GEQ 128 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 11 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 354 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 417 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 555 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 555 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 555 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 541 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 555 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 364 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 288 bp overlap
JUND 6 datasets
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 188 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 291 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 133 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF6 1 dataset
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 382 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 275 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 92 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 300 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 555 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 370 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 260 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 555 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 368 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 366 bp overlap
ChIP hESC GSE20650.NANOG.hESC 183 bp overlap
ChIP hESC GSE18292.NANOG.hESC 157 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NIPBL 4 datasets
ChIP WA09 GSE105028.NIPBL.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 270 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 189 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 205 bp overlap
NKX2-3 1 dataset
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
Nkx2-1 1 dataset
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 12 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 520 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 140 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 200 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 231 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 292 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 345 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 475 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 244 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 180 bp overlap
POU6F1 1 dataset
ChIP SK-N-SH ENCFF834EMP 118 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RAD21 1 dataset
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 186 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Rarb 2 datasets
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 260 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 293 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 182 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 244 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 320 bp overlap
SOX10 2 datasets
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP OSKM GSE81899.SOX2.OSKM 139 bp overlap
ChIP hESC GSE18292.SOX2.hESC 151 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
SOX4 2 datasets
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 319 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5a 1 dataset
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 291 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 3 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 366 bp overlap
ChIP WTC11 ENCFF502QUV 389 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 462 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 89 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 403 bp overlap
TEF 1 dataset
Motif ES_0h ES_0h-TEF_MA0843.2 10 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 493 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 280 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF384 1 dataset
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 284 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF76 1 dataset
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
ZNF85 1 dataset
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap