chr3 : 153,062,044 – 153,062,830
786 bp 111 TFs 1 linked gene
This 786 bp open chromatin element is linked to RAP2B and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAP2B 99.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:153,057,044 – 153,067,830
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 646 bp overlap
ChIP K562 ENCFF938UXQ 269 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 124 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR155KHM.ARNT.K-562 281 bp overlap
ARNT::HIF1A 3 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_72h DE_72h-ARNTHIF1A_MA0259.2 5 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 327 bp overlap
BHLHE22 1 dataset
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 283 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 422 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 142 bp overlap
ChIP K562 ENCFF673OEZ 267 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 431 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 305 bp overlap
ChIP K562 ENCFF567XUT 432 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 157 bp overlap
CHAMP1 1 dataset
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 265 bp overlap
CREB1 1 dataset
Motif DE_48h DE_48h-CREB1_MA0018.5 8 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 478 bp overlap
DMRTA2 3 datasets
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 313 bp overlap
ChIP K562 ENCFF775HUO 289 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 254 bp overlap
ChIP K562 ENCFF053BWO 385 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 151 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 293 bp overlap
ERF::SREBF2 1 dataset
Motif DE_48h DE_48h-ERFSREBF2_MA1939.2 16 bp overlap
FEZF2 2 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 729 bp overlap
ChIP DE DE-FOXA2-2 609 bp overlap
FOXK2 4 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 281 bp overlap
ChIP K-562 ENCSR302AWT.FOXK2.K-562 309 bp overlap
ChIP K562 ENCFF245WKP 417 bp overlap
ChIP K562 ENCFF851PFH 457 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 450 bp overlap
FOXP2 1 dataset
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 81 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 119 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 77 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 199 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 207 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 219 bp overlap
ChIP erythroblast ENCFF867JAR 567 bp overlap
ChIP erythroblast ENCFF867JAR 605 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 590 bp overlap
GATA2 3 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 168 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 565 bp overlap
ChIP DE DE-GATA4-2 621 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 563 bp overlap
ChIP DE DE-GATA6-2 615 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 653 bp overlap
ChIP foregut GSE117136.GATA6.foregut 419 bp overlap
GLI3 2 datasets
Motif DE_36h DE_36h-GLI3_MA1491.3 15 bp overlap
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
GLIS2 2 datasets
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
GLIS3 2 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 521 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 531 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 241 bp overlap
ChIP K562 ENCFF744ALD 421 bp overlap
HLTF 1 dataset
ChIP K562 ENCFF783OCM 263 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 180 bp overlap
ChIP K562 ENCFF055GAZ 511 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
Hand1 1 dataset
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 115 bp overlap
LARP7 1 dataset
ChIP K562 ENCFF550RPP 189 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 248 bp overlap
MEIS1 4 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 213 bp overlap
ChIP K562 ENCFF320GSD 381 bp overlap
MLX 2 datasets
Motif DE_36h DE_36h-MLX_MA0663.1 10 bp overlap
Motif DE_48h DE_48h-MLX_MA0663.1 10 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 246 bp overlap
MYNN 2 datasets
ChIP K-562 ENCSR737LTZ.MYNN.K-562 237 bp overlap
ChIP K562 ENCFF399UNK 365 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 501 bp overlap
NCOA2 1 dataset
ChIP K562 ENCFF365JLH 128 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 452 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 231 bp overlap
ChIP K562 ENCFF788MPU 421 bp overlap
ChIP K562 ENCFF866HRM 445 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 108 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Neurod2 1 dataset
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nkx2-1 1 dataset
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 246 bp overlap
ChIP K562 ENCFF286KMN 417 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 255 bp overlap
ChIP K562 ENCFF236IUS 457 bp overlap
Rarg 2 datasets
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SMAD2 1 dataset
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 453 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 425 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 416 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 534 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 312 bp overlap
ChIP K562 ENCFF506JCB 188 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 523 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 536 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 523 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 288 bp overlap
ChIP K562 ENCFF059YCJ 437 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_36h DE_36h-SREBF2_MA0828.3 10 bp overlap
Motif DE_48h DE_48h-SREBF2_MA0828.3 10 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Spz1 3 datasets
Motif DE_36h DE_36h-Spz1_MA0111.1 11 bp overlap
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TAL1 9 datasets
ChIP CD34 GSE52924.TAL1.CD34 106 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 210 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 190 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 232 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 185 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 211 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 241 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 236 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 255 bp overlap
ChIP K562 ENCFF931DJY 391 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 180 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
THRB 2 datasets
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
TRIM24 4 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 412 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 118 bp overlap
ChIP K562 ENCFF284DKY 158 bp overlap
ChIP K562 ENCFF284DKY 364 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR000BRW.TRIM28.K-562 145 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
VEZF1 2 datasets
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Wt1 2 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZBTB12 1 dataset
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 269 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 617 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 230 bp overlap
ZIC1 2 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 253 bp overlap
ZNF135 2 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF24 3 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 348 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 293 bp overlap
ChIP K562 ENCFF877JCX 429 bp overlap
ZNF384 1 dataset
ChIP K562 ENCFF365NXQ 228 bp overlap
ZNF460 2 datasets
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF592 3 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 477 bp overlap
ChIP K562 ENCFF547OSS 605 bp overlap
ChIP K562 ENCFF547OSS 548 bp overlap
ZNF644 1 dataset
ChIP K-562 ENCSR729HVR.ZNF644.K-562 198 bp overlap
ZNF740 2 datasets
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
ZNF770 2 datasets
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
ZNF85 2 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Zfx 2 datasets
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
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