chr3 : 136,860,443 136,860,889
446 bp 111 TFs 2 linked genes
This 446 bp open chromatin element is linked to NCK1-DT and NCK1 and is bound by 111 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NCK1-DT 1.1 kb Proximal Proximity
NCK1 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:136,855,443 – 136,865,889
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 236 bp overlap
ChIP HepG2 ENCFF317ZHO 263 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 129 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 143 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 164 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 306 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 74 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 141 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 217 bp overlap
CTCF 1 dataset
ChIP KMS-11 ENCFF853JKX 97 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 354 bp overlap
ChIP K562 ENCFF622HMZ 446 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP GM12878 ENCFF167CZS 304 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_48h DE_48h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 6 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 196 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 288 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 255 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 176 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 200 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 358 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 62 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 52 bp overlap
ChIP DE DE-FOXA2-1 329 bp overlap
ChIP DE DE-FOXA2-2 305 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 281 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 246 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 286 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 277 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 197 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 185 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 121 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 285 bp overlap
ChIP K562 ENCFF348IBL 216 bp overlap
ChIP K562 ENCFF771OHZ 365 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 179 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 320 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 192 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 54 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 60 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 446 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 187 bp overlap
ChIP K562 ENCFF320EQC 293 bp overlap
Lhx3 2 datasets
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
MAX 3 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 124 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 129 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 172 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 250 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
Motif DE_48h DE_48h-MEIS1_MA1639.2 9 bp overlap
MEIS2 3 datasets
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap
ChIP K-562 ENCSR851BNE.MEIS2.K-562 281 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 337 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 446 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 362 bp overlap
MGA 1 dataset
ChIP K-562 ENCSR710WLO.MGA.K-562 126 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 213 bp overlap
ChIP K-562 ENCSR180NCY.MTA3.K-562 181 bp overlap
MYC 1 dataset
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 142 bp overlap
MZF1 2 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 271 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 324 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 275 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 351 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 226 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 205 bp overlap
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 311 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 328 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 292 bp overlap
ChIP K562 ENCFF286KMN 336 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 117 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 230 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 207 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 322 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 146 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 323 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 323 bp overlap
SIX1 2 datasets
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF587VYG 256 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 156 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 197 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 242 bp overlap
SIX5 1 dataset
ChIP H1 ENCFF942SOJ 216 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 228 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 210 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 293 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 342 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 382 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 244 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 174 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 266 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 231 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 243 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 360 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 337 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 238 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 137 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 250 bp overlap
SPI1 15 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 213 bp overlap
ChIP GM12878 ENCFF134LCP 297 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 187 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 204 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 166 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 148 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 174 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 285 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 160 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 97 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 237 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 198 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 233 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 266 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 263 bp overlap
STAT3 5 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 146 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 175 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 198 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 190 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 137 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 117 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 428 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 311 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 186 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF265CEM 362 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 237 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 240 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 311 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 316 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 308 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 446 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 145 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 388 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 200 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 168 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
ZNF274 1 dataset
ChIP GM08714 ENCFF609SEN 394 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 226 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 184 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 209 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 243 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap