chr3 : 80,769,730 – 80,770,428
698 bp 116 TFs 1 linked gene
This 698 bp open chromatin element is linked to LINC02050 and is bound by 116 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02050 227 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:80,764,730 – 80,775,428
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 253 bp overlap
AR 9 datasets
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 102 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 102 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 186 bp overlap
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 215 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 113 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 72 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 108 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 88 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 63 bp overlap
ARID4B 2 datasets
ChIP K562 ENCFF791HBV 384 bp overlap
ChIP K562 ENCFF791HBV 83 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 231 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 285 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 213 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 221 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 201 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 199 bp overlap
BRD4 10 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 261 bp overlap
ChIP K-562_JQ1_2h GSE99178.BRD4.K-562_JQ1_2h 135 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 239 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 264 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 294 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 52 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 347 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 197 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 206 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 134 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 289 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 106 bp overlap
CREB1 3 datasets
ChIP K562 ENCFF786DGQ 71 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 110 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 112 bp overlap
CREB3 1 dataset
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CREBBP 2 datasets
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 188 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 143 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 137 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 250 bp overlap
ChIP K562 ENCFF403WPG 337 bp overlap
CTCF 1 dataset
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 133 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 331 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DDX21 1 dataset
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 127 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 257 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 157 bp overlap
EGR1 4 datasets
ChIP GM12878 ENCFF784ATC 56 bp overlap
ChIP GM12878 ENCSR000BRG.EGR1.GM12878 121 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 301 bp overlap
ChIP K562 ENCFF895KGN 172 bp overlap
EPAS1 3 datasets
ChIP 501-mel GSE95280.EPAS1.501-mel 127 bp overlap
Motif ES_0h ES_0h-EPAS1_MA2325.1 9 bp overlap
ChIP K-562 GSE123461.EPAS1.K-562 87 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 114 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 392 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
GABPB1 1 dataset
ChIP K-562 ENCSR138YYY.GABPB1.K-562 252 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 270 bp overlap
ChIP DE DE-GATA4-2 332 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 285 bp overlap
ChIP DE DE-GATA6-2 337 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 292 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 392 bp overlap
GMEB1 3 datasets
ChIP K-562 ENCSR376RCX.GMEB1.K-562 313 bp overlap
ChIP K562 ENCFF679VBB 186 bp overlap
ChIP K562 ENCFF705LHX 425 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 266 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 229 bp overlap
ChIP PC-3 GSE147455.HDAC1.PC-3 131 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 221 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 250 bp overlap
HDAC3 2 datasets
ChIP K-562 ENCSR024LKA.HDAC3.K-562 254 bp overlap
ChIP K562 ENCFF713GIR 304 bp overlap
HIF1A 3 datasets
ChIP 501-mel GSE95280.HIF1A.501-mel 202 bp overlap
Motif ES_0h ES_0h-HIF1A_MA1106.2 6 bp overlap
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 192 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HNRNPLL 4 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 431 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 431 bp overlap
ChIP K562 ENCFF541ZGX 372 bp overlap
ChIP K562 ENCFF598PWW 373 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 196 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 191 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGK.IRF1.K-562 121 bp overlap
JUN 1 dataset
ChIP K-562 ENCSR000EFS.JUN.K-562 206 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 226 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 202 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 200 bp overlap
LDB1 1 dataset
ChIP H9_DOX-0 GSE137670.LDB1.H9_DOX-0 163 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 191 bp overlap
ChIP K562 ENCFF398VJM 338 bp overlap
MBD2 2 datasets
ChIP HMEC-1 GSE63233.MBD2.HMEC-1 176 bp overlap
ChIP HMLER GSE63233.MBD2.HMLER 154 bp overlap
MED1 2 datasets
ChIP VCaP_DHT GSE125245.MED1.VCaP_DHT 171 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 210 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR107GRP.MLLT1.K-562 653 bp overlap
ChIP K-562 ENCSR675LRO.MLLT1.K-562 185 bp overlap
MNT 5 datasets
ChIP K-562 ENCSR979QYJ.MNT.K-562 259 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 278 bp overlap
ChIP K-562 ENCSR390VGH.MNT.K-562 477 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 255 bp overlap
ChIP K562 ENCFF450LDL 395 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR914NEI.MTA3.K-562 154 bp overlap
MYC 2 datasets
ChIP GEN2-2 GSE70275.MYC.GEN2-2 113 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 173 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 215 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NCOA6 2 datasets
ChIP K-562 ENCSR168CEE.NCOA6.K-562 262 bp overlap
ChIP K562 ENCFF471USR 261 bp overlap
NELFA 2 datasets
ChIP K-562_HS GSE112379.NELFA.K-562_HS 274 bp overlap
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 202 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 293 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 255 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFXL1 1 dataset
ChIP K-562 ENCSR085DDI.NFXL1.K-562 107 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 222 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NRF1 3 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 123 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 111 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 122 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 257 bp overlap
ChIP K562 ENCFF217UCA 367 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 142 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 174 bp overlap
POLR2A 9 datasets
ChIP GM12878 ENCFF521FXC 145 bp overlap
ChIP GM18951 ENCFF079KKO 270 bp overlap
ChIP GM18951 ENCFF079KKO 162 bp overlap
ChIP GM19193 ENCFF599VTO 241 bp overlap
ChIP K562 ENCFF137JSF 367 bp overlap
ChIP K562 ENCFF215CWW 352 bp overlap
ChIP K562 ENCFF262YXJ 290 bp overlap
ChIP K562 ENCFF757TUO 222 bp overlap
ChIP K562 ENCFF836GHX 257 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 339 bp overlap
ChIP K562 ENCFF648YPL 339 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 584 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PYGO2 1 dataset
ChIP K-562 ENCSR431XGJ.PYGO2.K-562 164 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBFOX2 4 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 247 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 248 bp overlap
ChIP K562 ENCFF196WTG 388 bp overlap
ChIP K562 ENCFF967GRF 386 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 90 bp overlap
SKIL 1 dataset
ChIP K-562 ENCSR336DXE.SKIL.K-562 148 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 76 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 225 bp overlap
ChIP K562 ENCFF941FJJ 212 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 227 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 542 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 257 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 301 bp overlap
TAF1 3 datasets
ChIP K-562 ENCSR000BKS.TAF1.K-562 181 bp overlap
ChIP K-562 ENCSR000BKS.TAF1.K-562 249 bp overlap
ChIP K562 ENCFF491WAE 302 bp overlap
TAF7 2 datasets
ChIP K-562 ENCSR671GFC.TAF7.K-562 352 bp overlap
ChIP K562 ENCFF314WLE 331 bp overlap
TARDBP 3 datasets
ChIP K-562 ENCSR429XTR.TARDBP.K-562 210 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 212 bp overlap
ChIP K562 ENCFF021QCU 95 bp overlap
TBP 4 datasets
ChIP K-562 GSE55306.TBP.K-562 256 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 169 bp overlap
ChIP K562 ENCFF901UYM 281 bp overlap
ChIP K562 ENCFF901UYM 56 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB2 2 datasets
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 429 bp overlap
ChIP K562 ENCFF290ESQ 214 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 114 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 50 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 100 bp overlap
ZBTB7A 3 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 148 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 290 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 263 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF536AJO 533 bp overlap
ChIP K562 ENCFF536AJO 553 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 106 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF316 3 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 492 bp overlap
ChIP K562 ENCFF281INV 323 bp overlap
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Zbtb2 1 dataset
Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap
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