chr1 : 58,031,449 58,031,950
501 bp 121 TFs 0 linked genes
This 501 bp open chromatin element has no linked target genes and is bound by 121 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:58,026,449 – 58,036,950
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 501 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 214 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 249 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 234 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 107 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 247 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 501 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 480 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 492 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 412 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 304 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 274 bp overlap
ETV5::FIGLA 3 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 392 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 196 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 213 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXB1 2 datasets
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 246 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 376 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 422 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 334 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
HLF 2 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HSF4 1 dataset
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 293 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 386 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 269 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 501 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 417 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 501 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 457 bp overlap
KLF17 2 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 282 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 341 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 254 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 332 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 423 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 501 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 281 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 501 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 501 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 419 bp overlap
ChIP hESC GSE20650.NANOG.hESC 396 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
ChIP hESC GSE18292.NANOG.hESC 146 bp overlap
NEUROG1 1 dataset
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIL3 2 datasets
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 315 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 370 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 465 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 415 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCGF1 2 datasets
ChIP WA01 GSE104690.PCGF1.WA01 57 bp overlap
ChIP WA01 GSE104690.PCGF1.WA01 240 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 5 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 5 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 266 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 204 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 363 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 407 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 501 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 184 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 379 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 317 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 372 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 400 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 501 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 334 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 178 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 416 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 106 bp overlap
Pou5f1::Sox2 5 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Prdm5 2 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 209 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 210 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 51 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 225 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 369 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 476 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 358 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 460 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 371 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 375 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 310 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 311 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 285 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 463 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 348 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 223 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 216 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 286 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 236 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 475 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 428 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 501 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 273 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 290 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 341 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 480 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 453 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 223 bp overlap
ChIP hESC GSE69479.SOX2.hESC 237 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 402 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 219 bp overlap
ChIP WTC11 ENCFF688PEU 370 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Spz1 4 datasets
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
TBP 4 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 175 bp overlap
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 129 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 213 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 472 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 356 bp overlap
ChIP WTC11 ENCFF502QUV 348 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 501 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 283 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 360 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 181 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 378 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 474 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 327 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 211 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 417 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 141 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 154 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 87 bp overlap