chr3 : 58,029,939 58,030,180
241 bp 101 TFs 0 linked genes
This 241 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,024,939 – 58,035,180
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 56 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 206 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 241 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 160 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 111 bp overlap
BCL11A 1 dataset
ChIP HEK293 ENCFF294OHB 237 bp overlap
BCL11B 1 dataset
ChIP HEK293 ENCFF859UHP 226 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 75 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 241 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 159 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 53 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 127 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 180 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 147 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 241 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 157 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 160 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 160 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 241 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 241 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 241 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 241 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 241 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 241 bp overlap
HOXB13 5 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 61 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 192 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 164 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 241 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 204 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 234 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 190 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 241 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 190 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 187 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 213 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 182 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 150 bp overlap
MZF1 3 datasets
ChIP HEK293 ENCFF683ZWN 241 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 196 bp overlap
ChIP HEK293 GSE76494.MZF1.HEK293 217 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 241 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 239 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 131 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 241 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 202 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 241 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 241 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 227 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 241 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 233 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 134 bp overlap
ChIP prostate gland ENCFF881OMH 116 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 241 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 116 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 241 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 241 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 241 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 241 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 192 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 225 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 241 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 241 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 210 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 241 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 241 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 241 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 241 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 241 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 218 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 241 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 241 bp overlap
SPI1 5 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 233 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 145 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 118 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 241 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 73 bp overlap
STAT1 1 dataset
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 107 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 122 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 241 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 206 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 185 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 180 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 241 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 211 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 186 bp overlap
TRIM28 6 datasets
ChIP HEK293 ENCFF265CEM 241 bp overlap
ChIP HEK293 ENCFF265CEM 159 bp overlap
ChIP HEK293 ENCFF582MWI 241 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 241 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 241 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 241 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 125 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 241 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 241 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 98 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 224 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 241 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 241 bp overlap
ChIP HEK293 ENCFF865LIO 158 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 241 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 241 bp overlap
ChIP HEK293 ENCFF847JIE 237 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 241 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 157 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 163 bp overlap
ZNF121 3 datasets
ChIP HEK293 ENCFF839FUF 241 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 241 bp overlap
ChIP HEK293 GSE76494.ZNF121.HEK293 223 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 172 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 226 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 163 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 241 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 170 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 191 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCFF308WOW 241 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 241 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 112 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 199 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 226 bp overlap
ZNF329 1 dataset
ChIP HEK293 GSE76494.ZNF329.HEK293 174 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 215 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 241 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 241 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 237 bp overlap
ZNF513 1 dataset
ChIP HEK293 ENCFF457TCC 228 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 76 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 85 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 161 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 241 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 164 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 241 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 241 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 241 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 241 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 225 bp overlap
ZNF623 1 dataset
ChIP HEK293 ENCFF505YHP 205 bp overlap
ZNF629 3 datasets
ChIP HEK293 ENCFF096ELQ 241 bp overlap
ChIP HEK293 ENCFF096ELQ 63 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 241 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 241 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 166 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCFF468FCG 64 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 61 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 237 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 241 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 234 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 161 bp overlap
ZSCAN26 1 dataset
ChIP HEK293 ENCFF212JDD 206 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 241 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 241 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 241 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 241 bp overlap