chr3 : 42,025,110 42,025,314
204 bp 110 TFs 0 linked genes
This 204 bp open chromatin element has no linked target genes and is bound by 110 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:42,020,110 – 42,030,314
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 195 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 182 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 204 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 143 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 139 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 204 bp overlap
BACH1 1 dataset
ChIP K562 ENCFF419VIM 204 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 202 bp overlap
BRD4 9 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 204 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 204 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 170 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 64 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 204 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 173 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 154 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 189 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 124 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 186 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 105 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 83 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 204 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 204 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF403LNW 121 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 204 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 122 bp overlap
ERG 4 datasets
ChIP ME-1 GSE46044.ERG.ME-1 204 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 204 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 204 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 194 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 204 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 165 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 114 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 201 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 159 bp overlap
FOXA1 11 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 177 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 177 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 143 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 204 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 149 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 104 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 128 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 194 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 104 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 153 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 171 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 123 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 148 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 204 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 116 bp overlap
GABPA 3 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
ChIP K562 ENCFF139LXS 204 bp overlap
ChIP K562 ENCFF139LXS 204 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 198 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 88 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 152 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 54 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 59 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 50 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 149 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 173 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 122 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 67 bp overlap
HSF1 1 dataset
ChIP MO91_CHX_10UM GSE45852.HSF1.MO91_CHX_10UM 204 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 204 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 121 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 204 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 161 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 204 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 204 bp overlap
KMT2A 8 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 204 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 160 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 204 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 204 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 153 bp overlap
ChIP L826 GSE83671.KMT2A.L826 204 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 201 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 204 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 204 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 204 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 204 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 5 datasets
ChIP G296S GSE85628.MED1.G296S 112 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 112 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 204 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 164 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 179 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 172 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 204 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 204 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 83 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 192 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 171 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 113 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 204 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 175 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 204 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 158 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF091YHT 204 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 204 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 117 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 134 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 204 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 149 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 139 bp overlap
REST 1 dataset
ChIP liver ENCFF240FWT 122 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
RUNX1 3 datasets
ChIP NB4 GSE81992.RUNX1.NB4 174 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 178 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 146 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 204 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 111 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 65 bp overlap
ChIP H1 ENCFF149IOE 204 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 115 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 183 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 68 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 119 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 204 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 78 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 204 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 112 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 96 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 71 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 60 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 204 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 203 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 204 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 202 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 66 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 136 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 165 bp overlap
SPI1 2 datasets
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 170 bp overlap
ChIP ME-1 GSE46044.SPI1.ME-1 95 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 92 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 204 bp overlap
STAT3 1 dataset
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 204 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 204 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 204 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 204 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 63 bp overlap
TP53 1 dataset
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
TP63 10 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 167 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 204 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 148 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 130 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 96 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 153 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 195 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 173 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 192 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 86 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 158 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 197 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 154 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 204 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF382 1 dataset
ChIP HepG2 ENCFF564AXY 103 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 184 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF8 1 dataset
ChIP HEK293 GSE76494.ZNF8.HEK293 56 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap