chr2 : 236,086,912 236,087,522
610 bp 92 TFs 2 linked genes
This 610 bp open chromatin element is linked to GBX2-AS1 and GBX2 and is bound by 92 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
GBX2-AS1 80.3 kb Distal Multiome
GBX2 81.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:236,081,912 – 236,092,522
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 511 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 327 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 266 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 140 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 440 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 395 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 282 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 610 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 159 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 439 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 197 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 537 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 543 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 144 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 169 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 315 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 469 bp overlap
E2F5 2 datasets
ChIP WTC11 ENCFF449LLF 342 bp overlap
ChIP WTC11 ENCFF449LLF 491 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 216 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 117 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 217 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 542 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 298 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 380 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 234 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 122 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 381 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 390 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 535 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 476 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 396 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 368 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 464 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 477 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 508 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 412 bp overlap
ChIP DE DE-FOXA2-2 381 bp overlap
FOXJ3 1 dataset
ChIP WTC11 ENCFF909BTK 337 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 381 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 216 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 202 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 314 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 502 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 419 bp overlap
ChIP H1 ENCFF939VKA 195 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 261 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 196 bp overlap
HNRNPK 3 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 74 bp overlap
ChIP HepG2 ENCFF493GNS 111 bp overlap
ChIP HepG2 ENCFF826MXP 107 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 398 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 393 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 182 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 242 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 71 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 379 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 514 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 420 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 491 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 185 bp overlap
KLF4 2 datasets
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 275 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
KLF9 2 datasets
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 93 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 291 bp overlap
MEIS1 2 datasets
ChIP A-673 GSE109477.MEIS1.A-673 212 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 159 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 360 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 246 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 484 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 390 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 599 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 434 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 332 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 541 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 516 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 475 bp overlap
ChIP hESC GSE20650.NANOG.hESC 294 bp overlap
ChIP hESC GSE18292.NANOG.hESC 270 bp overlap
NFIC 3 datasets
ChIP Ishikawa ENCFF029AAD 304 bp overlap
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 368 bp overlap
NIPBL 5 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 516 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 365 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 337 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 379 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 434 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 319 bp overlap
PCBP2 3 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 140 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 140 bp overlap
ChIP HepG2 ENCFF033VWK 65 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 449 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 227 bp overlap
PKNOX1 6 datasets
ChIP HEK293T ENCFF174WDB 156 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 303 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 375 bp overlap
ChIP K562 ENCFF236IUS 208 bp overlap
ChIP MCF-7 ENCFF116OCS 411 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 362 bp overlap
POU5F1 11 datasets
ChIP BG03 GSE21614.POU5F1.BG03 260 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 605 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 314 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 610 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 332 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 334 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 293 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 429 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 254 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 266 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 158 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 393 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 361 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 347 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 450 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 230 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 380 bp overlap
RELA 6 datasets
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 139 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 265 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 296 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 429 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 390 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 236 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 568 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 410 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 519 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 559 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 365 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 207 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 334 bp overlap
SMARCA4 7 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 185 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 218 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 416 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 312 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 406 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 553 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 610 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 576 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 210 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 559 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 538 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 580 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 398 bp overlap
SOX2 8 datasets
ChIP H9 GSE46837.SOX2.H9 240 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 492 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 317 bp overlap
ChIP hESC GSE18292.SOX2.hESC 208 bp overlap
ChIP hESC GSE69479.SOX2.hESC 255 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 334 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 342 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 302 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 315 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 318 bp overlap
ChIP WTC11 ENCFF688PEU 377 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 134 bp overlap
SPI1 2 datasets
ChIP THP-1 GSE128834.SPI1.THP-1 174 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 126 bp overlap
STAT1 2 datasets
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 60 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 251 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 193 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 270 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 154 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 288 bp overlap
TCF12 5 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP Ishikawa ENCFF467DDW 411 bp overlap
ChIP Ishikawa ENCFF467DDW 471 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 368 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 260 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 262 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 479 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 399 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 439 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 360 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 238 bp overlap
ZNF143 2 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 60 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 365 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 154 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 522 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 308 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 228 bp overlap
ChIP H9 GSE133630.ZNF398.H9 300 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 242 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 267 bp overlap
ZNF93 1 dataset
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap