chr2 : 219,698,728 219,699,086
358 bp 110 TFs 0 linked genes
This 358 bp open chromatin element has no linked target genes and is bound by 110 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:219,693,728 – 219,704,086
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 358 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 262 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 136 bp overlap
ATXN7L3 1 dataset
ChIP HCT-116_thaps GSE121798.ATXN7L3.HCT-116_thaps 358 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 298 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 358 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 358 bp overlap
BRD4 6 datasets
ChIP HCT-116 GSE57628.BRD4.HCT-116 358 bp overlap
ChIP HCT-116_JQ1 GSE57628.BRD4.HCT-116_JQ1 332 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 211 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 269 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 358 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 358 bp overlap
CBX2 1 dataset
ChIP K562 ENCFF578AQI 358 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 269 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 358 bp overlap
CDK9 4 datasets
ChIP HCT-116 GSE132705.CDK9.HCT-116 358 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 358 bp overlap
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 109 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 180 bp overlap
CEBPB 1 dataset
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 279 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 245 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 358 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 144 bp overlap
EGR1 1 dataset
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 157 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 358 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 358 bp overlap
EP300 1 dataset
ChIP 697 GSE138031.EP300.697 231 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 263 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 343 bp overlap
ETS1 4 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 261 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 303 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 258 bp overlap
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 254 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 284 bp overlap
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 309 bp overlap
ChIP neural progenitor cell ENCFF018MKA 358 bp overlap
FLI1 7 datasets
ChIP A-673 GSE99959.FLI1.A-673 266 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 358 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 351 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 335 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 346 bp overlap
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 206 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 270 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 214 bp overlap
FOSL1 1 dataset
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 303 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 123 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 215 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 358 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 306 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 358 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 358 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 358 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 358 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 358 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 358 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 317 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 332 bp overlap
GLIS2 1 dataset
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 300 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 132 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 354 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 232 bp overlap
HNF4A 6 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 84 bp overlap
ChIP HCT-116 GSE62890.HNF4A.HCT-116 79 bp overlap
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 292 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 358 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 182 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 109 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 239 bp overlap
ICE2 1 dataset
ChIP HCT-116 GSE47938.ICE2.HCT-116 225 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 358 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 358 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 358 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 260 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 173 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 295 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 215 bp overlap
JUND 3 datasets
ChIP GP5D GSE51234.JUND.GP5D 145 bp overlap
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 238 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 324 bp overlap
KLF4 3 datasets
ChIP PDAC GSE64557.KLF4.PDAC 358 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 245 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 176 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 238 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 358 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 109 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 325 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 358 bp overlap
MAX 1 dataset
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 228 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 213 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 358 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 215 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 203 bp overlap
MYC 2 datasets
ChIP GP5D GSE51234.MYC.GP5D 169 bp overlap
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 223 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 358 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 358 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 358 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 358 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 326 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 211 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 166 bp overlap
NIPBL 3 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 358 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 358 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 358 bp overlap
NR3C1 2 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 109 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 119 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 358 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 358 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 151 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 58 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 343 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 358 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 358 bp overlap
PRDM4 1 dataset
ChIP HCT-116_B3 GSE152144.PRDM4.HCT-116_B3 153 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 135 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 151 bp overlap
RAD21 3 datasets
ChIP GP5D GSE51234.RAD21.GP5D 186 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 305 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 171 bp overlap
RELA 4 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 211 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 145 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 137 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 358 bp overlap
RFX1 1 dataset
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RNF2 1 dataset
ChIP A-549 ENCSR798EGJ.RNF2.A-549 358 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 338 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 184 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 184 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 202 bp overlap
SIN3A 1 dataset
ChIP HCT-116 ENCSR000BSG.SIN3A.HCT-116 191 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 358 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 358 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 172 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 358 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 358 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 94 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 145 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 358 bp overlap
SMARCA4 8 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 303 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 298 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 304 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 274 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 291 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 193 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 358 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 358 bp overlap
SMARCC1 2 datasets
ChIP HCT-116 GSE71510.SMARCC1.HCT-116 147 bp overlap
ChIP HCT-116_F1 GSE152144.SMARCC1.HCT-116_F1 148 bp overlap
SMC1 2 datasets
ChIP HCT-116 GSE131606.SMC1.HCT-116 96 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.SMC1.HCT-116_RAD21-mAC_500uM_auxin 114 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 358 bp overlap
SOX2 10 datasets
ChIP HCC2814 GSE137459.SOX2.HCC2814 200 bp overlap
ChIP HCC95 GSE137459.SOX2.HCC95 320 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 358 bp overlap
ChIP KNS-62 GSE137459.SOX2.KNS-62 342 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 331 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 358 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 358 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 358 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 358 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 358 bp overlap
SRF 1 dataset
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 208 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 197 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 124 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 341 bp overlap
SUPT5H 6 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 189 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 358 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 189 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 85 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 358 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 193 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 179 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 358 bp overlap
TCF7L2 7 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 358 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 274 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 255 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 212 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 265 bp overlap
ChIP HCT116 ENCFF038POZ 232 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 358 bp overlap
TEAD4 1 dataset
ChIP HCT-116 ENCSR000BVJ.TEAD4.HCT-116 182 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 358 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 306 bp overlap
TP63 3 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 84 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 194 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 183 bp overlap
YY1 2 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 222 bp overlap
ChIP HCT116 ENCFF497ZQZ 271 bp overlap
ZBED2 1 dataset
ChIP SUIT-2 GSE141606.ZBED2.SUIT-2 272 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 176 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 125 bp overlap
ZIC2 1 dataset
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 358 bp overlap
ZIC5 6 datasets
ChIP HCT-116_C16-CT289 GSE127960.ZIC5.HCT-116_C16-CT289 207 bp overlap
ChIP HCT-116_C18-CT289 GSE127960.ZIC5.HCT-116_C18-CT289 207 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 238 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 225 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 220 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 273 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 147 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 187 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 182 bp overlap