chr2 : 121,680,120 121,680,609
489 bp 87 TFs 4 linked genes
This 489 bp open chromatin element is linked to 4 target genes and is bound by 87 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
NIFK-AS1 30.7 kb Distal Multiome
CLASP1 30.9 kb Distal Multiome
NIFK 56.6 kb Distal Multiome
TSN 75.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:121,675,120 – 121,685,609
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 435 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 449 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 189 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 157 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 191 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 321 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 156 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 310 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 395 bp overlap
ChIP H1 ENCFF126NLU 162 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 422 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 319 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 196 bp overlap
CTNNB1 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 342 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 370 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 342 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 171 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 299 bp overlap
ChIP WTC11 ENCFF812SCD 425 bp overlap
FOXN3 2 datasets
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 287 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
Foxq1 2 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 145 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 158 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 220 bp overlap
ChIP H1 ENCFF353UJQ 437 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 174 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 152 bp overlap
HOXB13 1 dataset
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 145 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 402 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 424 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 319 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 354 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 336 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 169 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 117 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 327 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 224 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 277 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 300 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 235 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 177 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 305 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 338 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 210 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 362 bp overlap
ChIP H1 ENCFF747ZPQ 120 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 489 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 489 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 390 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 489 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 489 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 450 bp overlap
ChIP hESC GSE20650.NANOG.hESC 313 bp overlap
ChIP hESC GSE18292.NANOG.hESC 193 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 362 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 324 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 210 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 268 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 273 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 244 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 211 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 478 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU5F1 19 datasets
ChIP BG03 GSE21614.POU5F1.BG03 264 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 112 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 489 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 416 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 489 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 256 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 171 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 282 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 261 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 415 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 405 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 357 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 440 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 489 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 385 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 214 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 361 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 252 bp overlap
PRDM14 2 datasets
ChIP hESC GSE138674.PRDM14.hESC 272 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 174 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 346 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 248 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 249 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 489 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 345 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 345 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 368 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 436 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 376 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 271 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 281 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 427 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 398 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 219 bp overlap
ChIP hESC GSE69479.SOX2.hESC 280 bp overlap
ChIP hESC GSE18292.SOX2.hESC 194 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 398 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 290 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 291 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 153 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 294 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 156 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 234 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 367 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 189 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif ES_0h ES_0h-TFAP4FLI1_MA1967.2 14 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 327 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 292 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 222 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 133 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 219 bp overlap
ZNF143 3 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 272 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 210 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF410 2 datasets
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap