chrX : 148,441,155 – 148,441,939
784 bp 121 TFs 1 linked gene
This 784 bp open chromatin element is linked to AFF2 and is bound by 121 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AFF2 59.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:148,436,155 – 148,446,939
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 232 bp overlap
ARNT::HIF1A 1 dataset
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 278 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 317 bp overlap
Arid3a 2 datasets
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL11A 4 datasets
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 172 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 123 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 261 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 253 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 454 bp overlap
BHLHE22 1 dataset
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 215 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 328 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 184 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 222 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 209 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 291 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 67 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 112 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 243 bp overlap
ChIP hESC GSE17917.EP300.hESC 297 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 516 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 133 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 2 datasets
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 201 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 408 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 196 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
INSM1 1 dataset
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
IRF3 1 dataset
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
ISL2 1 dataset
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 285 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 347 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 325 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MAF 1 dataset
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 1 dataset
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 1 dataset
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 298 bp overlap
MEF2B 1 dataset
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif ES_0h ES_0h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 331 bp overlap
Mafg 2 datasets
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 265 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 372 bp overlap
ChIP H1 ENCFF747ZPQ 164 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 784 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 606 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 375 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 782 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 704 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 649 bp overlap
ChIP hESC GSE20650.NANOG.hESC 415 bp overlap
ChIP hESC GSE18292.NANOG.hESC 268 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 342 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 260 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 288 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 225 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 288 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 199 bp overlap
Neurod2 1 dataset
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
Nkx3-1 1 dataset
Motif ES_0h ES_0h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU4F1 1 dataset
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 226 bp overlap
ChIP GM23338 ENCFF333SNB 90 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 575 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 594 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 784 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 164 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 235 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 297 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 296 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 249 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 658 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 677 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 355 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 328 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 391 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 329 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 748 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 233 bp overlap
REST 1 dataset
ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 294 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 276 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 151 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 241 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 447 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 330 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 366 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 487 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 270 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 394 bp overlap
SOX10 3 datasets
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 7 datasets
ChIP H9 GSE46837.SOX2.H9 218 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 421 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 355 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 480 bp overlap
ChIP hESC GSE69479.SOX2.hESC 262 bp overlap
ChIP hESC GSE18292.SOX2.hESC 117 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 419 bp overlap
SOX4 2 datasets
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 274 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 181 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SREBF1 1 dataset
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 244 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 383 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 370 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 211 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif ES_0h ES_0h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 495 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 397 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 379 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 183 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 533 bp overlap
ZBTB18 1 dataset
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 401 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 259 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 680 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZSCAN21 1 dataset
Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap
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