chr20 : 47,876,376 47,876,884
508 bp 89 TFs 2 linked genes
This 508 bp open chromatin element is linked to SULF2 and NCOA3 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SULF2 91.1 kb Distal Multiome
NCOA3 374.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:47,871,376 – 47,881,884
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 155 bp overlap
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 187 bp overlap
ARNT 1 dataset
ChIP HEK293T ENCFF302BEZ 281 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 243 bp overlap
BCLAF1 2 datasets
ChIP K-562 ENCSR792IYC.BCLAF1.K-562 85 bp overlap
ChIP K-562 ENCSR492LTS.BCLAF1.K-562 211 bp overlap
BRD4 8 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 508 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 182 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 63 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 495 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 165 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 191 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 299 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 466 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCFF341ZEM 352 bp overlap
ChIP MCF-7 ENCFF867SAS 342 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCFF969VBY 257 bp overlap
CUX1 3 datasets
ChIP MCF-7 ENCFF779ATB 167 bp overlap
ChIP MCF-7 ENCFF779ATB 234 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 214 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 254 bp overlap
ChIP hESC GSE26097.EOMES.hESC 150 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 508 bp overlap
ChIP neural cell ENCFF442QNK 450 bp overlap
ChIP neural cell ENCFF442QNK 376 bp overlap
ESR1 13 datasets
ChIP MCF-7 GSE94023.ESR1.MCF-7 139 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 159 bp overlap
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 173 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 173 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 210 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 241 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 274 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 339 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 508 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 152 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT_SRC-3 191 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 152 bp overlap
ChIP MCF-7_shFbxo_OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_OHT_SRC-3 191 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 166 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 166 bp overlap
EWSR1 1 dataset
ChIP K-562 ENCSR142YYA.EWSR1.K-562 233 bp overlap
EZH2 5 datasets
ChIP HeLa-S3 ENCFF318LHU 508 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 457 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 358 bp overlap
ChIP HepG2 ENCFF912EIW 484 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 480 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 337 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 292 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 267 bp overlap
FLI1 1 dataset
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 150 bp overlap
FOXA1 7 datasets
ChIP MCF-7 GSE80808.FOXA1.MCF-7 508 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 319 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 142 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 179 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 190 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 182 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 238 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 508 bp overlap
ChIP DE DE-FOXA2-2 508 bp overlap
GATA3 4 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 273 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 307 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 284 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 174 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 464 bp overlap
ChIP DE DE-GATA4-2 508 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 508 bp overlap
ChIP DE DE-GATA6-2 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 508 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 477 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 305 bp overlap
GATAD2B 1 dataset
ChIP MCF-7 ENCFF718AXM 341 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 199 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 318 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 296 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 416 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 180 bp overlap
HDGF 2 datasets
ChIP MCF-7 ENCFF179XHG 274 bp overlap
ChIP MCF-7 ENCFF179XHG 65 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 416 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 508 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 117 bp overlap
ChIP HEK293 ENCFF518OXG 186 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 508 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 486 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 224 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 213 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 297 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 341 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 408 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 330 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF427MRU 392 bp overlap
ChIP liver ENCFF565JGD 407 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 497 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 209 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 131 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 401 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 223 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 262 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 468 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 316 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 508 bp overlap
PPP1R10 1 dataset
ChIP MCF-7 ENCFF027ROL 351 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 111 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 273 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 140 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 237 bp overlap
ChIP MCF-7 ENCFF694KOM 153 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 464 bp overlap
RB1 1 dataset
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 177 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 278 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 508 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 424 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 508 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 452 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 508 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 508 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 508 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 449 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 508 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 451 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 508 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 508 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 130 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 469 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 289 bp overlap
SMARCA4 7 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 508 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 247 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 298 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 62 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 508 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 508 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 275 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 261 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 139 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 176 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 93 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 260 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 257 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 155 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 396 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 456 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 481 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 143 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 508 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 508 bp overlap
STAT3 4 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 508 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 319 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 242 bp overlap
ChIP MCF-7_jc5846 GSE126004.STAT3.MCF-7_jc5846 247 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 246 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF265CEM 508 bp overlap
ChIP HEK293 ENCFF265CEM 431 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 422 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 508 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 508 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 208 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 208 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 419 bp overlap
YBX1 1 dataset
ChIP MCF-7 ENCFF783FFV 361 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 267 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 306 bp overlap
ZBTB11 2 datasets
ChIP K562 ENCFF694AXU 241 bp overlap
ChIP K562 ENCFF694AXU 317 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 327 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 487 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 319 bp overlap
ZKSCAN1 1 dataset
ChIP MCF-7 ENCFF247MBY 321 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 335 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 508 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 156 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 258 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 142 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 139 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 400 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 498 bp overlap