chr19 : 47,819,694 – 47,820,135
441 bp 87 TFs 1 linked gene
This 441 bp open chromatin element is linked to CRX and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CRX at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:47,814,694 – 47,825,135
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARNT 3 datasets
ChIP GM12878 ENCFF831TWO 70 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 136 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 220 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 441 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 141 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 82 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 70 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 103 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 110 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 79 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 198 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 179 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 121 bp overlap
BRD4 9 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 95 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 102 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 118 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 103 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 391 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 441 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 441 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 441 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 181 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 402 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 142 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 186 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 79 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 264 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 75 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 176 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 242 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 294 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 392 bp overlap
CTCF 4 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 244 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 400 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 422 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 428 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 109 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 90 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 255 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 347 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 320 bp overlap
ChIP breast_tumor_Male_25 GSE104399.ESR1.breast_tumor_Male_25 272 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D5 GSE129986.ETS1.cardiomyocyte_D5 176 bp overlap
EZH2 7 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 441 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 362 bp overlap
ChIP OCI-Ly1 GSE45982.EZH2.OCI-Ly1 178 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 441 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 154 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 185 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 380 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 441 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 276 bp overlap
ChIP DE DE-GATA4-2 303 bp overlap
ChIP foregut GSE117136.GATA4.foregut 235 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 342 bp overlap
ChIP DE DE-GATA6-2 251 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 344 bp overlap
ChIP foregut GSE117136.GATA6.foregut 220 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 280 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 283 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 362 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 393 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 104 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 169 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 188 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 269 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 95 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 240 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 185 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 82 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 306 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 137 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 188 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 375 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 331 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 242 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 236 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 211 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 248 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 308 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 369 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 423 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 315 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 139 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 134 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 262 bp overlap
MYB 1 dataset
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 176 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 73 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 84 bp overlap
NANOG 6 datasets
ChIP H1 ENCFF747ZPQ 237 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 311 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 218 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 226 bp overlap
ChIP hESC GSE18292.NANOG.hESC 117 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 441 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 439 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 441 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 293 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 189 bp overlap
OTX2 2 datasets
ChIP WTC11 ENCFF634NAO 234 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 361 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 115 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 105 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 301 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 341 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 290 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 386 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 277 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 308 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 404 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 366 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 75 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 68 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 414 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 142 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 172 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 267 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 312 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 231 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 103 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 240 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 215 bp overlap
SMARCC1 3 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 162 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 195 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 345 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 192 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 348 bp overlap
SOX8 3 datasets
ChIP RH4 GSE116344.SOX8.RH4 177 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 248 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 184 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 231 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 198 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 86 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 68 bp overlap
ChIP GM12878 ENCFF134LCP 64 bp overlap
ChIP GM12891 ENCFF563IUT 101 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 84 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 54 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 66 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 295 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 176 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 163 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 169 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 69 bp overlap
WDR5 1 dataset
ChIP MV4-11_DMSO GSE115377.WDR5.MV4-11_DMSO 119 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 101 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 371 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 121 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 197 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 372 bp overlap
ZNF675 1 dataset
ChIP HEK293T GSE78099.ZNF675.HEK293T 270 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 252 bp overlap
Huangfu Lab · Publications · Resources · Contact