chr19 : 46,000,993 46,001,197
204 bp 88 TFs 1 linked gene
This 204 bp open chromatin element is linked to CCDC61 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CCDC61 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:45,995,993 – 46,006,197
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 121 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 158 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 84 bp overlap
BCL11A 3 datasets
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 54 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 58 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 107 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 127 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 204 bp overlap
BRD4 8 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 102 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 166 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 65 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 183 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 204 bp overlap
ChIP hESC GSE33281.BRD4.hESC 62 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 185 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 90 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 88 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 87 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 105 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 58 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 186 bp overlap
EGR1 12 datasets
ChIP GM12878 ENCFF092DJY 118 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 76 bp overlap
ChIP Ishikawa ENCFF550FKT 202 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 108 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 69 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 187 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 166 bp overlap
ChIP K562 ENCFF006PJY 157 bp overlap
ChIP K562 ENCFF113OPQ 204 bp overlap
ChIP K562 ENCFF895KGN 204 bp overlap
ChIP MCF-7 ENCFF679ZBN 203 bp overlap
ChIP MCF-7 ENCSR000BUX.EGR1.MCF-7 128 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 106 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 70 bp overlap
EP300 2 datasets
ChIP T-47D ENCSR000BLM.EP300.T-47D 129 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 73 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 79 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 65 bp overlap
ETS1 1 dataset
ChIP K-562 ENCSR000BKQ.ETS1.K-562 93 bp overlap
EZH2 1 dataset
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 139 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 118 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 204 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 95 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 117 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 132 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 204 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 80 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 152 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 191 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 204 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 204 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 119 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 204 bp overlap
KLF9 4 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 188 bp overlap
ChIP HEK293 ENCFF588INF 204 bp overlap
ChIP HEK293 ENCFF588INF 108 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 204 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 143 bp overlap
MAX 3 datasets
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 177 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 204 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 140 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 195 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 197 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 74 bp overlap
MED1 1 dataset
ChIP MCF-7_SHCTR_E2 GSE60270.MED1.MCF-7_SHCTR_E2 166 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 54 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 169 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 204 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 129 bp overlap
MYC 2 datasets
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 62 bp overlap
ChIP Jurkat GSE83777.MYC.Jurkat 123 bp overlap
MYCN 2 datasets
ChIP BE2C GSE80151.MYCN.BE2C 187 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 204 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 188 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 77 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 128 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 55 bp overlap
ChIP HEK293 ENCFF016MNJ 204 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 131 bp overlap
PCBP1 2 datasets
ChIP K-562 GSE120104.PCBP1.K-562 189 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 190 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 63 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 204 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 204 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 52 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 204 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 168 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 136 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 91 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 113 bp overlap
RFX5 6 datasets
ChIP GM12878 ENCFF768MIX 101 bp overlap
ChIP GM12878 ENCSR000DZW.RFX5.GM12878 156 bp overlap
ChIP MCF-7 ENCFF983ILY 93 bp overlap
ChIP SK-N-SH ENCFF755HLO 182 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 204 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 119 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 184 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE76181.RUNX1.Jurkat 190 bp overlap
RUNX3 2 datasets
ChIP GM12878 ENCFF395WHA 169 bp overlap
ChIP GM12878 ENCFF395WHA 192 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 153 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 116 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 72 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 191 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 154 bp overlap
SMARCC1 2 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 196 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 77 bp overlap
SP1 4 datasets
ChIP GM12878 ENCSR000BHK.SP1.GM12878 193 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 204 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 164 bp overlap
ChIP WTC11 ENCFF688PEU 204 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 204 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 172 bp overlap
SP3 1 dataset
ChIP HEK293 ENCFF087XLA 159 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 204 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 204 bp overlap
ChIP monocyte GSE129202.SREBP2.monocyte 202 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 204 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 105 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 96 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 121 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 92 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 147 bp overlap
ChIP neural cell ENCFF468SPD 101 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 119 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 120 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 120 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 169 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 67 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 86 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BKU.YY1.K-562 105 bp overlap
ZBTB10 2 datasets
ChIP HEK293 ENCFF679BCK 95 bp overlap
ChIP HEK293 ENCSR004PLU.ZBTB10.HEK293 59 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCFF148RLQ 204 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 184 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 137 bp overlap
ChIP K562 ENCFF795CMH 204 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 193 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 120 bp overlap
ZNF143 1 dataset
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 193 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 56 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 204 bp overlap