chr17 : 73,973,921 73,975,163
1,242 bp 108 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to LINC02074 and RPL38 and is bound by 108 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC02074 138.2 kb Distal Multiome
RPL38 229.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:73,968,921 – 73,980,163
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ASCL1 5 datasets
ChIP G523NS_Dox GSE87618.ASCL1.G523NS_Dox 260 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 247 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 295 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 280 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 146 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 254 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 371 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 168 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 327 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 232 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 361 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 125 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 274 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 240 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 688 bp overlap
CTCF 1 dataset
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
DMRTA1 1 dataset
Motif DE_72h DE_72h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_72h DE_72h-DMRTC2_MA1479.2 11 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 138 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 371 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 220 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 74 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap
ETV1 2 datasets
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 533 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 268 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 582 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 141 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 598 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 553 bp overlap
ChIP DE DE-FOXA2-2 564 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 383 bp overlap
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 188 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 300 bp overlap
GATA2 5 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 333 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 369 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 257 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 359 bp overlap
ChIP NGP GSE65664.GATA3.NGP 233 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 1118 bp overlap
ChIP DE DE-GATA4-2 1112 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 832 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 512 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 409 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 328 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 232 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 1123 bp overlap
ChIP DE DE-GATA6-2 1139 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1086 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1033 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1242 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1063 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 945 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1072 bp overlap
ChIP foregut GSE117136.GATA6.foregut 800 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 341 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 366 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 368 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 357 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 390 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 720 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 732 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 780 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 431 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 310 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 355 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 782 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 427 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 253 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 446 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 286 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 215 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 209 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 263 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 418 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 339 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 721 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 231 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 218 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 652 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 339 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 229 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 478 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NFKB1 2 datasets
Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 199 bp overlap
NFKB2 1 dataset
Motif DE_72h DE_72h-NFKB2_MA0778.2 11 bp overlap
NR2F6 1 dataset
Motif DE_72h DE_72h-NR2F6_MA1539.1 15 bp overlap
NRL 1 dataset
ChIP HepG2 ENCFF528PUT 490 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 456 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 389 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 690 bp overlap
POLR2A 2 datasets
ChIP transverse colon ENCFF607LKE 371 bp overlap
ChIP transverse colon ENCFF840PXT 103 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 396 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 399 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 492 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 258 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 389 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 180 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 516 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 86 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA1555.1 14 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1242 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 286 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1091 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 966 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 555 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 226 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 209 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 293 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 431 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 576 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1046 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
TAL1 1 dataset
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 263 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 197 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 325 bp overlap
TCF12 1 dataset
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 363 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 309 bp overlap
TCF3 3 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 274 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 623 bp overlap
ChIP RPMI8402 GSE39179.TCF3.RPMI8402 201 bp overlap
TCF4 3 datasets
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 512 bp overlap
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TEAD1 1 dataset
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 336 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 336 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 253 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 102 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 199 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 676 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 676 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 452 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF669 1 dataset
Motif DE_72h DE_72h-ZNF669_MA1985.1 15 bp overlap
ZNF684 1 dataset
Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap
ZNF692 1 dataset
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap
Zfx 1 dataset
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap