chr1 : 245,649,267 245,649,814
547 bp 125 TFs 0 linked genes
This 547 bp open chromatin element has no linked target genes and is bound by 125 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:245,644,267 – 245,654,814
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 182 bp overlap
ARID3A 2 datasets
ChIP GM12878 ENCSR725LYT.ARID3A.GM12878 144 bp overlap
ChIP HepG2 ENCFF341DES 233 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 342 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 117 bp overlap
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 142 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 191 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 223 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 273 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 313 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 223 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 171 bp overlap
CTCF 24 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 166 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 201 bp overlap
ChIP GM10266 ENCFF241YYF 126 bp overlap
ChIP GM10266 ENCFF892KUY 126 bp overlap
ChIP GM12878 ENCFF511URZ 134 bp overlap
ChIP GM12878 ENCFF635MMB 137 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 273 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 95 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 93 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 225 bp overlap
ChIP GM23338 ENCFF772DML 167 bp overlap
ChIP HepG2 ENCFF757EKU 223 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 187 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 204 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 93 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 147 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 138 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 123 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 272 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 99 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 272 bp overlap
ChIP neural cell ENCFF335ADI 284 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 241 bp overlap
CUX2 1 dataset
Motif DE_24h DE_24h-CUX2_MA0755.2 9 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 254 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 341 bp overlap
EGR1 3 datasets
ChIP A-375 GSE116190.EGR1.A-375 69 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 184 bp overlap
ChIP HepG2 ENCFF674RQO 235 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 346 bp overlap
ETV2::DRGX 2 datasets
Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_24h DE_24h-ETV2DRGX_MA1940.2 12 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 221 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 350 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 92 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 534 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap
FOSL2 2 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 111 bp overlap
ChIP HepG2 ENCFF548CXY 174 bp overlap
FOXA1 2 datasets
ChIP HepG2 ENCFF361KNY 89 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 131 bp overlap
FOXA2 3 datasets
ChIP HepG2 ENCFF533COJ 89 bp overlap
ChIP HepG2 ENCFF570ABM 56 bp overlap
ChIP HepG2 ENCFF894AYY 127 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 138 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 308 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 196 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 131 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 236 bp overlap
ChIP DE DE-GATA6-2 291 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 299 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 457 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 468 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 428 bp overlap
ChIP foregut GSE117136.GATA6.foregut 127 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 246 bp overlap
HHEX 1 dataset
ChIP HepG2 ENCFF618PVM 77 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 176 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 178 bp overlap
ChIP GM12878 ENCFF824TGK 227 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 309 bp overlap
IRF4 3 datasets
ChIP GM12878 ENCFF769ZDL 227 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 186 bp overlap
ChIP KK-1 GSE94732.IRF4.KK-1 115 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 302 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 434 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 418 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 236 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 157 bp overlap
JUND 1 dataset
ChIP HepG2 ENCFF172HFZ 82 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 258 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
KLF7 2 datasets
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 186 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 237 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 78 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 316 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 218 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 370 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 270 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 246 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 390 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCFF503GOV 240 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 195 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 193 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF526NOJ 199 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 106 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 236 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 382 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
ChIP HepG2 ENCFF422JZU 176 bp overlap
POU2F2 3 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
ChIP GM12891 ENCFF166YPP 186 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 397 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 430 bp overlap
RAD21 10 datasets
ChIP GM12878 ENCFF046CBW 167 bp overlap
ChIP GM12878 ENCFF101UQZ 147 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 151 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 119 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF360ZSW 139 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 74 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 130 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 203 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 275 bp overlap
RELA 2 datasets
ChIP GM12878 ENCSR664POU.RELA.GM12878 203 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 253 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 406 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 376 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 161 bp overlap
ChIP K-562 ENCSR588AKU.RUNX1.K-562 115 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 347 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 206 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 265 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 394 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 353 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 408 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 378 bp overlap
SMAD4 1 dataset
ChIP HepG2 ENCFF615GTE 69 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 222 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 547 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 239 bp overlap
SMARCC1 6 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 263 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 396 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 192 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 193 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 527 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 201 bp overlap
SMC3 2 datasets
ChIP GM12878 ENCFF085RLZ 271 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 317 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 136 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 2 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 123 bp overlap
ChIP HepG2 ENCFF843EBZ 262 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX21 4 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 408 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 382 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 118 bp overlap
TCF7 1 dataset
ChIP HepG2 ENCFF628OFQ 142 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 171 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
YY1 3 datasets
ChIP GM12878 ENCFF908JTL 345 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 118 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 148 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 114 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_24h DE_24h-ZNF214_MA1975.2 13 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF609 1 dataset
ChIP HepG2 ENCFF900FRP 169 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 115 bp overlap
ChIP HepG2 ENCFF653WIX 508 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap