chr17:7,853,062–7,853,638

chr17 : 7,853,062 – 7,853,638

576 bp 99 TFs 5 linked genes

This 576 bp open chromatin element is linked to 5 target genes and is bound by 99 transcription factors.

Linked Genes

5 genes

Gene	Expression	Dist. to TSS	Distance	Link type
TMEM88		1.4 kb	Proximal	Proximity
NAA38		3.6 kb	Proximal	Proximity
CYB5D1		4.1 kb	Proximal	Proximity
ENSG00000280046		5.3 kb	Proximal	Proximity
KDM6B		8.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

99 transcription factors

AGO2 2 datasets

ChIP HepG2 ENCFF252VFI 533 bp overlap

ChIP HepG2 ENCFF773YDL 556 bp overlap

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 220 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 238 bp overlap

ARID2 2 datasets

ChIP Aska-SS GSE108025.ARID2.Aska-SS 463 bp overlap

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 306 bp overlap

ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 414 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 422 bp overlap

BCOR 2 datasets

ChIP WA01 GSE104690.BCOR.WA01 517 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 576 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 52 bp overlap

BRD4 14 datasets

ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 494 bp overlap

ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 344 bp overlap

ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 306 bp overlap

ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 576 bp overlap

ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 345 bp overlap

ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 296 bp overlap

ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 329 bp overlap

ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 261 bp overlap

ChIP COLO-741 GSE73319.BRD4.COLO-741 415 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 327 bp overlap

ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 301 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 576 bp overlap

ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 332 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 379 bp overlap

ChIP hESC GSE133412.CBX7.hESC 105 bp overlap

ChIP HCT-116 GSE72622.CDK9.HCT-116 200 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 171 bp overlap

CTBP2 2 datasets

ChIP H1 ENCFF329MAX 456 bp overlap

ChIP WA01 ENCSR000EUO.CTBP2.WA01 316 bp overlap

CTCF 8 datasets

ChIP adrenal gland ENCFF678WUB 64 bp overlap

ChIP erythroid GSE67783.CTCF.erythroid 166 bp overlap

ChIP foreskin keratinocyte ENCFF980OWR 411 bp overlap

ChIP hESC_D5 GSE116862.CTCF.hESC_D5 282 bp overlap

ChIP keratinocyte ENCFF046PBT 185 bp overlap

ChIP keratinocyte ENCFF291YDC 185 bp overlap

ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 135 bp overlap

ChIP spleen ENCFF643KOU 252 bp overlap

CTCFL 1 dataset

ChIP K-562 GSE70764.CTCFL.K-562 167 bp overlap

ChIP NTERA2 GSE58641.DDX5.NTERA2 331 bp overlap

DNMT3B 1 dataset

ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 222 bp overlap

ChIP WTC11 ENCFF994SXO 327 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 134 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 408 bp overlap

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 396 bp overlap

ChIP K-562 GSE23730.ERG.K-562 185 bp overlap

ChIP K-562_DOX GSE23730.ERG.K-562_DOX 210 bp overlap

ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 201 bp overlap

ETS1 3 datasets

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 200 bp overlap

ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 216 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 376 bp overlap

EZH2 3 datasets

ChIP H1 ENCFF232NZA 576 bp overlap

ChIP H1 ENCFF232NZA 576 bp overlap

ChIP hESC GSE113817.EZH2.hESC 372 bp overlap

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 288 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 490 bp overlap

FOXP1 1 dataset

ChIP WTC11 ENCFF338WGC 512 bp overlap

GLIS2 2 datasets

ChIP HEK293 ENCFF446EIF 216 bp overlap

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 158 bp overlap

GRHL2 1 dataset

ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 187 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 533 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 576 bp overlap

HNRNPL 4 datasets

ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 285 bp overlap

ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 194 bp overlap

ChIP K-562 ENCSR594BNR.HNRNPL.K-562 250 bp overlap

ChIP K-562 GSE120104.HNRNPL.K-562 228 bp overlap

IFNA1 2 datasets

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 334 bp overlap

ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 247 bp overlap

JARID2 3 datasets

ChIP AMIPS6 GSE48516.JARID2.AMIPS6 415 bp overlap

ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 576 bp overlap

ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 256 bp overlap

ChIP A549 ENCFF846DUV 343 bp overlap

ChIP Karpas-299 GSE151413.JUN.Karpas-299 205 bp overlap

KDM4A 3 datasets

ChIP H1 ENCFF078LED 536 bp overlap

ChIP H1 ENCFF078LED 267 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 297 bp overlap

ChIP keratinocyte GSE140991.KLF3.keratinocyte 576 bp overlap

KMT2A 1 dataset

ChIP blood_cord GSE83671.KMT2A.blood_cord 171 bp overlap

ChIP H1 ENCFF914VQY 357 bp overlap

ChIP H1 ENCFF914VQY 109 bp overlap

ChIP WTC11 ENCFF223QFY 439 bp overlap

ChIP WTC11 ENCFF223QFY 240 bp overlap

ChIP HeLa GSE41006.MBD2.HeLa 123 bp overlap

MED1 3 datasets

ChIP G296S_4 GSE85628.MED1.G296S_4 59 bp overlap

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 343 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 275 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 267 bp overlap

MYOCD 1 dataset

ChIP A-549 GSE128921.MYOCD.A-549 278 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 445 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 329 bp overlap

NCAPH2 2 datasets

ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 410 bp overlap

ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 553 bp overlap

NKX2-1 1 dataset

ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 90 bp overlap

NR1H2 1 dataset

ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 199 bp overlap

NR2F2 2 datasets

ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 470 bp overlap

ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 379 bp overlap

NR3C1 2 datasets

ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 298 bp overlap

ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 321 bp overlap

NRF1 2 datasets

ChIP HMEC-1 GSE67867.NRF1.HMEC-1 150 bp overlap

ChIP HMEC-1 GSE67867.NRF1.HMEC-1 132 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 154 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 179 bp overlap

POLR2A 8 datasets

ChIP A549 ENCFF034EBG 361 bp overlap

ChIP GM18505 ENCFF311CYB 422 bp overlap

ChIP spleen ENCFF044PYR 196 bp overlap

ChIP spleen ENCFF446ZGT 423 bp overlap

ChIP spleen ENCFF706IUS 576 bp overlap

ChIP suprapubic skin ENCFF083NEJ 331 bp overlap

ChIP transverse colon ENCFF193UMS 63 bp overlap

ChIP transverse colon ENCFF193UMS 372 bp overlap

POLR2G 2 datasets

ChIP K562 ENCFF047BLG 576 bp overlap

ChIP K562 ENCFF648YPL 576 bp overlap

POU2F1 2 datasets

ChIP T-47D GSE148277.POU2F1.T-47D 168 bp overlap

ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 207 bp overlap

POU5F1 6 datasets

ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 121 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 338 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 372 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 107 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 256 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 411 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 576 bp overlap

PRDM15 1 dataset

ChIP WTC11 ENCFF108TMF 269 bp overlap

PTBP1 1 dataset

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 258 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 394 bp overlap

RBFOX2 6 datasets

ChIP HepG2 ENCFF554DMZ 539 bp overlap

ChIP HepG2 ENCFF939HTZ 539 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 576 bp overlap

ChIP K-562 GSE120104.RBFOX2.K-562 576 bp overlap

ChIP K562 ENCFF196WTG 576 bp overlap

ChIP K562 ENCFF967GRF 576 bp overlap

RBM22 5 datasets

ChIP HepG2 ENCFF292RVQ 134 bp overlap

ChIP K-562 GSE120104.RBM22.K-562 576 bp overlap

ChIP K-562 ENCSR848AOP.RBM22.K-562 576 bp overlap

ChIP K562 ENCFF420JDS 515 bp overlap

ChIP K562 ENCFF629OUL 499 bp overlap

RBM39 4 datasets

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 106 bp overlap

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 106 bp overlap

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 110 bp overlap

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 104 bp overlap

ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 259 bp overlap

RNF2 2 datasets

ChIP H1 ENCFF239FFS 419 bp overlap

ChIP WA01 GSE104690.RNF2.WA01 556 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 508 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 179 bp overlap

SIRT6 1 dataset

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 380 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 349 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 271 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 300 bp overlap

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 308 bp overlap

SMARCA4 2 datasets

ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 337 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 225 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 294 bp overlap

SMARCC1 1 dataset

ChIP ESC S25-ESC-d0-BAF155-exp1 268 bp overlap

SMC1 2 datasets

ChIP HCT-116 GSE131606.SMC1.HCT-116 109 bp overlap

ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 365 bp overlap

SMC1A 2 datasets

ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 251 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 293 bp overlap

ChIP HEK293 ENCSR807LQP.SP2.HEK293 132 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 453 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 542 bp overlap

STAG1 1 dataset

ChIP erythroid GSE67783.STAG1.erythroid 289 bp overlap

STAT3 2 datasets

ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 222 bp overlap

ChIP WA01 ERP004237.STAT3.WA01 366 bp overlap

SUPT5H 1 dataset

ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 436 bp overlap

SUZ12 7 datasets

ChIP H1 ENCFF881NFR 556 bp overlap

ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 85 bp overlap

ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 125 bp overlap

ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 142 bp overlap

ChIP WA01 ENCSR000ATS.SUZ12.WA01 223 bp overlap

ChIP hiPSC GSE124903.SUZ12.hiPSC 493 bp overlap

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 576 bp overlap

TARDBP 1 dataset

ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 209 bp overlap

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 136 bp overlap

ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 377 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 576 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 576 bp overlap

TFIIIC 1 dataset

ChIP HEK293 GSE119418.TFIIIC.HEK293 228 bp overlap

TGIF2 1 dataset

ChIP WTC11 ENCFF649SHI 441 bp overlap

TP63 5 datasets

ChIP BxPC-3 GSE115461.TP63.BxPC-3 186 bp overlap

ChIP keratinocyte GSE33571.TP63.keratinocyte 205 bp overlap

ChIP keratinocyte GSE56674.TP63.keratinocyte 154 bp overlap

ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 99 bp overlap

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 198 bp overlap

TRIM24 1 dataset

ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 462 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 399 bp overlap

TRIM28 1 dataset

ChIP HCT-116 GSE72622.TRIM28.HCT-116 109 bp overlap

ChIP WTC11 ENCFF139JAW 397 bp overlap

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 459 bp overlap

ChIP Huh-7 GSE97411.YY1.Huh-7 252 bp overlap

ZBTB33 1 dataset

ChIP K562 ENCFF427SDV 332 bp overlap

ZBTB43 1 dataset

ChIP WTC11 ENCFF058JUB 481 bp overlap

ZBTB7A 1 dataset

ChIP K562 ENCFF579ZGM 70 bp overlap

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 552 bp overlap

ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 576 bp overlap

ZMYND11 1 dataset

ChIP HeLa GSE51672.ZMYND11.HeLa 114 bp overlap

ZNF711 1 dataset

ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 576 bp overlap