chr16 : 54,289,334 54,289,776
442 bp 105 TFs 2 linked genes
This 442 bp open chromatin element is linked to IRX3 and ENSG00000283689 and is bound by 105 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IRX3 2.5 kb Proximal Proximity
ENSG00000283689 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:54,284,334 – 54,294,776
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 188 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 339 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 130 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 202 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 278 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 333 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 442 bp overlap
Ahr::Arnt 2 datasets
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 442 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 442 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 442 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 71 bp overlap
BRD4 7 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 432 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 372 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 370 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 394 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 424 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 442 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 359 bp overlap
CBX7 3 datasets
ChIP hESC GSE133412.CBX7.hESC 239 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 216 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 241 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 442 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 350 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 296 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 176 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 442 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 378 bp overlap
CTCF 1 dataset
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 442 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 213 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 214 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 180 bp overlap
ChIP H1 ENCFF785DWK 349 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 442 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 244 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 422 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 273 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 431 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 208 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 335 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 365 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 154 bp overlap
ETS2 1 dataset
Motif ES_0h ES_0h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 394 bp overlap
EZH2 16 datasets
ChIP GM23338 ENCFF613YON 442 bp overlap
ChIP GM23338 ENCFF886DXX 81 bp overlap
ChIP H1 ENCFF232NZA 442 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 442 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 442 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 373 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 342 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 442 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 442 bp overlap
ChIP hESC GSE113817.EZH2.hESC 263 bp overlap
ChIP hepatocyte ENCFF118DKH 243 bp overlap
ChIP hepatocyte ENCFF552DZB 442 bp overlap
ChIP neural cell ENCFF610EPB 104 bp overlap
ChIP neural cell ENCFF610EPB 330 bp overlap
ChIP neural progenitor cell ENCFF018MKA 442 bp overlap
ChIP neural progenitor cell ENCFF472NFV 442 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 442 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 154 bp overlap
ChIP H9 GSE31006.FOXP1.H9 153 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 303 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 362 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 364 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 398 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 238 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 412 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 86 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 442 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 164 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 279 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 205 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 6 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 405 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 442 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 442 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 434 bp overlap
ChIP hESC GSE133412.JARID2.hESC 228 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 212 bp overlap
JUN 4 datasets
ChIP 786-O GSE86092.JUN.786-O 356 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 409 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 438 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 280 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 268 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 442 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 237 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 103 bp overlap
ChIP H1 ENCFF914VQY 302 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 111 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 435 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 370 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 442 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 415 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 424 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 328 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 304 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 322 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 384 bp overlap
NRF1 1 dataset
ChIP H1 ENCFF582PEJ 191 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 396 bp overlap
Nrf1 1 dataset
Motif ES_0h ES_0h-Nrf1_MA0506.3 12 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 415 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 320 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 376 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 320 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 186 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 357 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 442 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 196 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 442 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 442 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 442 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 198 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 437 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 410 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 384 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 442 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 442 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 87 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 442 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 442 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 183 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 428 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 231 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 151 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 134 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 174 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 416 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 313 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 351 bp overlap
SMARCA4 5 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 193 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 189 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 140 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 442 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 332 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 390 bp overlap
SMC3 2 datasets
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 165 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 318 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 442 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 442 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 255 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 442 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 442 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 311 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF881NFR 442 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 232 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 288 bp overlap
ChIP NT2/D1 ENCFF574SXS 174 bp overlap
ChIP NT2/D1 ENCFF574SXS 201 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 442 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 289 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 300 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 201 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 237 bp overlap
TARDBP 2 datasets
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 209 bp overlap
ChIP Hep-G2 GSE120104.TARDBP.Hep-G2 162 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 334 bp overlap
TCFL5 1 dataset
Motif ES_0h ES_0h-TCFL5_MA0632.3 8 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 442 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 422 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 400 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 125 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 342 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 422 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 235 bp overlap
ChIP HEK293 ENCFF582MWI 209 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 442 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 154 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 298 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 145 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 261 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap