chr15 : 57,385,937 57,386,391
454 bp 106 TFs 2 linked genes
This 454 bp open chromatin element is linked to CGNL1 and TCF12 and is bound by 106 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CGNL1 9.4 kb Proximal Proximity
TCF12 467.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:57,380,937 – 57,391,391
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 145 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 454 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 439 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 391 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 198 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 102 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 207 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 134 bp overlap
BRD4 2 datasets
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 177 bp overlap
ChIP hESC GSE33281.BRD4.hESC 112 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CBX2 2 datasets
ChIP HEK293T GSE34774.CBX2.HEK293T 63 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 101 bp overlap
CDX2 2 datasets
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 168 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 454 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 320 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 94 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 250 bp overlap
ChIP hESC GSE17917.EP300.hESC 196 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 176 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 336 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 454 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 372 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 440 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA10 2 datasets
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB13 3 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
ChIP G-401 GSE65381.HOXB13.G-401 410 bp overlap
HOXD9 2 datasets
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmx2 2 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hoxa13 2 datasets
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 2 datasets
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 95 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 95 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 343 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 403 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 56 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAX 6 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF601FOM 151 bp overlap
ChIP H1 ENCFF914VQY 221 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 277 bp overlap
ChIP WTC11 ENCFF223QFY 345 bp overlap
ChIP WTC11 ENCFF223QFY 145 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 309 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYBL2 2 datasets
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
Motif ES_0h ES_0h-MYBL2_MA0777.1 15 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 133 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 454 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 411 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 336 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 453 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 454 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 326 bp overlap
ChIP hESC GSE18292.NANOG.hESC 254 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NR1D1 1 dataset
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nkx3-1 1 dataset
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 257 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 263 bp overlap
ChIP H1 ENCFF566JSR 313 bp overlap
ChIP H1 ENCFF566JSR 268 bp overlap
ChIP H1 ENCFF770YBQ 345 bp overlap
ChIP H1 ENCFF833NJP 227 bp overlap
POU5F1 12 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 319 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 454 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 354 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 241 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 164 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 421 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 454 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 301 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 173 bp overlap
PPARG 1 dataset
Motif ES_0h ES_0h-PPARG_MA0066.2 19 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 431 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 343 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 454 bp overlap
ChIP H1 ENCFF905HFL 261 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 248 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 273 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 252 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 96 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 109 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 125 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 274 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 454 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 395 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 289 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 260 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 408 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 454 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 378 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 366 bp overlap
ChIP WTC11 ENCFF688PEU 454 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000ATS.SUZ12.WA01 154 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 404 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 93 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 252 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 332 bp overlap
TBP 8 datasets
ChIP H1 ENCFF859IIO 371 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 414 bp overlap
ChIP hESC GSE122298.TBP.hESC 340 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 363 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 454 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 257 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 304 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 346 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 367 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 454 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 200 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 258 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 452 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 336 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 288 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 235 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 175 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 339 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF354A 2 datasets
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap