chr12 : 116,876,126 116,876,628
502 bp 82 TFs 5 linked genes
This 502 bp open chromatin element is linked to 5 target genes and is bound by 82 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
HRK 4.5 kb Proximal Proximity
FBXW8 34.4 kb Distal Multiome
RNFT2 138.2 kb Distal Multiome
SPRING1 138.4 kb Distal Multiome
TESC 223.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:116,871,126 – 116,881,628
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 426 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 121 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 502 bp overlap
ChIP H1 ENCFF399KAM 169 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 492 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 348 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 492 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 389 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 502 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 363 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 156 bp overlap
BRD4 3 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 237 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 344 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 363 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 149 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 206 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 163 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 141 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 398 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 78 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 110 bp overlap
EGR1 4 datasets
ChIP H1 ENCFF451BLH 133 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 190 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 99 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 123 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 89 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 237 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 351 bp overlap
EZH2 7 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 396 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 466 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 325 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 444 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 265 bp overlap
ChIP neural progenitor cell ENCFF018MKA 502 bp overlap
ChIP neural progenitor cell ENCFF018MKA 120 bp overlap
FLI1 2 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 312 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 288 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 309 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 308 bp overlap
ChIP DE DE-GATA6-2 370 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 280 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 271 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 411 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 347 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 502 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 502 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 180 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 418 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 401 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 413 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 480 bp overlap
JUN 3 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 397 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 256 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 305 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 492 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 246 bp overlap
MAX 4 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 284 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 293 bp overlap
ChIP WTC11 ENCFF223QFY 381 bp overlap
ChIP melanocyte GSE115845.MAX.melanocyte 187 bp overlap
MED26 1 dataset
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 296 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 84 bp overlap
MYC 3 datasets
ChIP HFF_OHT_SHBPTF GSE65544.MYC.HFF_OHT_SHBPTF 160 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 210 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 312 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 191 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 329 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 356 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 377 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 182 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 191 bp overlap
MYOD1 5 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 318 bp overlap
ChIP RD GSE137168.MYOD1.RD 234 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 360 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 392 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 182 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 433 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 218 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 477 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 302 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 344 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 355 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 334 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 369 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 292 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 322 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 327 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 502 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 494 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 335 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 495 bp overlap
RAD21 1 dataset
ChIP IMR-5 GSE78957.RAD21.IMR-5 126 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 386 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 430 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 502 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 407 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 283 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 202 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 148 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 502 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 428 bp overlap
RUNX1 1 dataset
ChIP CD34 GSE64862.RUNX1.CD34 160 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 461 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 368 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 486 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 428 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 342 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 163 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 502 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 413 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 324 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 349 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 437 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 392 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 277 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 272 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 260 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 431 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 378 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 429 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 188 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 502 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 229 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 260 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 388 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 173 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 282 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 187 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 72 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 247 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 450 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 152 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 466 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 158 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 353 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 407 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 438 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 502 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 460 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 316 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 316 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 167 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 175 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 190 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 208 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 385 bp overlap
ChIP HepG2 ENCFF331VPZ 381 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 208 bp overlap