chr12 : 108,316,165 108,316,921
756 bp 72 TFs 4 linked genes
This 756 bp open chromatin element is linked to 4 target genes and is bound by 72 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CMKLR1 3.7 kb Proximal Proximity
FICD 198.7 kb Distal Multiome
SART3 244.6 kb Distal Multiome
ISCU 246.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:108,311,165 – 108,321,921
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 163 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 756 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 302 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 200 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 420 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 232 bp overlap
BRD4 2 datasets
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 494 bp overlap
ChIP hESC GSE33281.BRD4.hESC 78 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 184 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP H1 ENCFF329MAX 526 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 678 bp overlap
CTCF 18 datasets
ChIP GM12878 ENCFF511URZ 171 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 127 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 118 bp overlap
ChIP GM23338 ENCFF772DML 169 bp overlap
ChIP H1 ENCFF764RHO 199 bp overlap
ChIP H9 ENCFF152GTF 260 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 194 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 143 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 115 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 119 bp overlap
ChIP K562 ENCFF082GOI 168 bp overlap
ChIP K562 ENCFF111MGE 226 bp overlap
ChIP K562 ENCFF400DFR 199 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 153 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 195 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 276 bp overlap
ChIP BLaER1 ENCFF364PUR 498 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 321 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF432UGA 365 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 226 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 291 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 194 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 129 bp overlap
ETV6 2 datasets
ChIP GM12878 GSE97661.ETV6.GM12878 186 bp overlap
ChIP WTC11 ENCFF812SCD 399 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 354 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 484 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 156 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 302 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 276 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 319 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 510 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 530 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 400 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 204 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 181 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 229 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 220 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 305 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 546 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 605 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 448 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 305 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 516 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 247 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 142 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 126 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 234 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 361 bp overlap
MED1 3 datasets
ChIP GM12878 GSE93080.MED1.GM12878 129 bp overlap
ChIP GM12878 GSE93080.MED1.GM12878 420 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 284 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 191 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 314 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 151 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 210 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 753 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 435 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 256 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 603 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 377 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 318 bp overlap
ChIP hESC GSE20650.NANOG.hESC 183 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 211 bp overlap
NIPBL 3 datasets
ChIP GM12878 GSE93080.NIPBL.GM12878 219 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 258 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 295 bp overlap
POU2F2 3 datasets
ChIP GM12878 ENCFF207RKY 321 bp overlap
ChIP GM12891 ENCFF166YPP 311 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 126 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 276 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 756 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 748 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 304 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 151 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 201 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 214 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 414 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 174 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 215 bp overlap
ChIP H1 ENCFF967OJF 198 bp overlap
ChIP K562 ENCFF634XYR 251 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 252 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 220 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 205 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 348 bp overlap
RELA 4 datasets
ChIP 786-O GSE86092.RELA.786-O 154 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 291 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 329 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 181 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 214 bp overlap
REST 4 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 217 bp overlap
ChIP K562 ENCFF688UKW 160 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 223 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 178 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 285 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 580 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 544 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 306 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 376 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 467 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 206 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 226 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 188 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 291 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 620 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 407 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 425 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 214 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 756 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 388 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 321 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 338 bp overlap
SPI1 2 datasets
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 138 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 307 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 199 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 332 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 287 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 281 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 169 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 268 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 177 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 113 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 196 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 180 bp overlap
YY1 4 datasets
ChIP GM12892 ENCSR000BLT.YY1.GM12892 126 bp overlap
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 144 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 350 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 472 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 225 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 746 bp overlap