chr1 : 204,707,179 – 204,707,469
290 bp 80 TFs 1 linked gene
This 290 bp open chromatin element is linked to RNA5SP75 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNA5SP75 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:204,702,179 – 204,712,469
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 146 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 163 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 94 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 140 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 199 bp overlap
BMI1 3 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 258 bp overlap
ChIP K-562 ENCSR782WRO.BMI1.K-562 220 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 290 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 182 bp overlap
BRD4 8 datasets
ChIP K-562 GSE140325.BRD4.K-562 101 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 146 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 64 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 239 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 154 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 123 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 241 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 268 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 290 bp overlap
COMMD3-BMI1,BMI1 2 datasets
ChIP K562 ENCFF139VAJ 252 bp overlap
ChIP MCF-7 ENCFF570JPP 263 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 206 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 164 bp overlap
CSDE1 1 dataset
ChIP K562 ENCFF313FYC 277 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 176 bp overlap
ChIP H1 ENCFF927IYK 208 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 262 bp overlap
ChIP neural cell ENCFF442QNK 290 bp overlap
ESR1 1 dataset
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 120 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 290 bp overlap
ChIP WTC11 ENCFF812SCD 90 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 97 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 290 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 290 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF679VBB 54 bp overlap
GTF3A 1 dataset
ChIP HEK293 GSE76494.GTF3A.HEK293 138 bp overlap
GTF3C2 2 datasets
ChIP H9 GSE94418.GTF3C2.H9 275 bp overlap
ChIP K-562 ENCSR000DOD.GTF3C2.K-562 139 bp overlap
GTF3C5 1 dataset
ChIP IMR-5_CD532 GSE78957.GTF3C5.IMR-5_CD532 165 bp overlap
HNRNPL 2 datasets
ChIP K562 ENCFF296JLL 189 bp overlap
ChIP K562 ENCFF779NTZ 189 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 290 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 160 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 75 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 226 bp overlap
ChIP K562 ENCFF398VJM 178 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 207 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 290 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 160 bp overlap
MXI1 4 datasets
ChIP K-562 ENCSR000EGZ.MXI1.K-562 146 bp overlap
ChIP K562 ENCFF336XYS 208 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 126 bp overlap
ChIP neural cell ENCFF623HQN 224 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 166 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 148 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 290 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 143 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 201 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 226 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 285 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 90 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 126 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF679FCN 109 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 197 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 290 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 290 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 290 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 290 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 109 bp overlap
PTBP1 1 dataset
ChIP K-562 GSE120104.PTBP1.K-562 165 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 290 bp overlap
ChIP neural cell ENCFF564MOT 191 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 125 bp overlap
RBM39 2 datasets
ChIP K-562 GSE120104.RBM39.K-562 249 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 258 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 197 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 290 bp overlap
ChIP neural cell ENCFF882LXX 290 bp overlap
RFX1 9 datasets
ChIP HepG2 ENCFF144SCF 282 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 290 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 290 bp overlap
ChIP K562 ENCFF421AVO 290 bp overlap
ChIP K562 ENCFF809XVG 290 bp overlap
ChIP MCF-7 ENCFF782EZS 290 bp overlap
ChIP MCF-7 ENCFF973QAD 290 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 290 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 290 bp overlap
RFX5 1 dataset
ChIP H1 ENCFF605EGG 290 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 183 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 146 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 290 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 285 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 198 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 202 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 290 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 211 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 184 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 253 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 284 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 185 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 177 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 149 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 290 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 116 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 290 bp overlap
ChIP neural cell ENCFF795YGY 290 bp overlap
ChIP neural cell ENCFF795YGY 203 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 290 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 290 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 217 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 67 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 79 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 182 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 234 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 128 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 143 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 201 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 285 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 136 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 51 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 107 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 263 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 197 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 138 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 101 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 290 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 270 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 52 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 145 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 148 bp overlap
ZKSCAN1 1 dataset
ChIP K562 ENCFF977CBA 114 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 138 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 229 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 156 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 290 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 147 bp overlap
ZNF77 1 dataset
ChIP K562 ENCFF128OJR 154 bp overlap
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