chr11 : 65,184,109 – 65,184,542
433 bp 85 TFs 21 linked genes
This 433 bp open chromatin element is linked to 21 target genes and is bound by 85 transcription factors.
Linked Genes
21 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CAPN1-AS1 2.3 kb Proximal Proximity
CAPN1 2.3 kb Proximal Proximity
ENSG00000293278 7.6 kb Proximal Proximity
SYVN1 49.8 kb Distal Multiome
MRPL49 62.0 kb Distal Multiome
FAU 62.2 kb Distal Multiome
ZNHIT2 66.7 kb Distal Multiome
TM7SF2 72.5 kb Distal Multiome
POLA2 77.6 kb Distal Multiome
VPS51 88.1 kb Distal Multiome
ZFPL1 100.1 kb Distal Multiome
CDCA5 100.3 kb Distal Multiome
ENSG00000287917 130.4 kb Distal Multiome
CDC42EP2 130.5 kb Distal Multiome
SAC3D1 143.1 kb Distal Multiome
DPF2 149.5 kb Distal Multiome
SNX15 156.9 kb Distal Multiome
ARL2 170.2 kb Distal Multiome
FRMD8 202.3 kb Distal Multiome
NEAT1 238.4 kb Distal Multiome
ATG2A 267.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:65,179,109 – 65,189,542
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 189 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 206 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 111 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 260 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 415 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 423 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 214 bp overlap
BRD4 6 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 236 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 247 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 109 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 211 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 279 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 284 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 176 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 202 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 101 bp overlap
CTCF 3 datasets
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 231 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 189 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 243 bp overlap
CTCFL 2 datasets
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 381 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 165 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 110 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 109 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 228 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 339 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 213 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 323 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 385 bp overlap
GABPA 4 datasets
ChIP H1 ENCFF739QFD 305 bp overlap
ChIP H1 ENCFF739QFD 70 bp overlap
ChIP VCaP GSE49091.GABPA.VCaP 78 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 188 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_15 GSE104399.GATA3.breast_tumor_Male_15 233 bp overlap
GRHL2 3 datasets
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 65 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 215 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 72 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 234 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 127 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 201 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 367 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 109 bp overlap
INSM1 2 datasets
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP MCF-7 ENCFF948KTQ 152 bp overlap
KLF5 2 datasets
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 185 bp overlap
KLF6 1 dataset
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
KLF9 3 datasets
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 102 bp overlap
ChIP MCF-7 ENCFF618FCM 433 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP HCT116 ENCFF810LEN 71 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 341 bp overlap
NEUROG2 1 dataset
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFYA 1 dataset
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
ChIP K-562 ENCSR000EGQ.NFYB.K-562 157 bp overlap
ChIP WTC11 ENCFF751ZTQ 137 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 325 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 433 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 187 bp overlap
ChIP GM23338 ENCFF450WCS 232 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 238 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 222 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 252 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 272 bp overlap
PRDM9 2 datasets
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 164 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 207 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 345 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 337 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 298 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 221 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 247 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 243 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 298 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 197 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 288 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 3 datasets
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 93 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 254 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 210 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SP1 4 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 258 bp overlap
ChIP WTC11 ENCFF688PEU 394 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 384 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 122 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 312 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 418 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 307 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 51 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 433 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 197 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 187 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 193 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 271 bp overlap
TP53 1 dataset
ChIP GM06170 GSE55727.TP53.GM06170 83 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 328 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 271 bp overlap
USF2 2 datasets
ChIP WTC11 ENCFF139JAW 359 bp overlap
ChIP WTC11 ENCFF139JAW 110 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 361 bp overlap
ZBED4 2 datasets
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF257 2 datasets
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 2 datasets
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
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