chr11 : 56,659,767 56,660,258
491 bp 93 TFs 0 linked genes
This 491 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:56,654,767 – 56,665,258
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 263 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 491 bp overlap
ChIP H1 ENCFF399KAM 407 bp overlap
ChIP H1 ENCFF399KAM 208 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 491 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 400 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 480 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 220 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 225 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 218 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 190 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 285 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 133 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 129 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 256 bp overlap
ChIP H1 ENCFF126NLU 444 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 265 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 270 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 345 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 324 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 290 bp overlap
CTCF 2 datasets
ChIP GM23338 ENCFF772DML 155 bp overlap
ChIP H9 ENCFF152GTF 254 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 222 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 306 bp overlap
ChIP hESC GSE17917.EP300.hESC 250 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 373 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 328 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 192 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 248 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 268 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 151 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 180 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 350 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 223 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 278 bp overlap
HDAC2 5 datasets
ChIP H1 ENCFF353UJQ 455 bp overlap
ChIP H1 ENCFF353UJQ 474 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 241 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 221 bp overlap
IRF6 1 dataset
Motif DE_12h DE_12h-IRF6_MA1509.1 9 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 491 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 323 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 180 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 403 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 327 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 124 bp overlap
KLF4 3 datasets
ChIP WA09 GSE105028.KLF4.WA09 277 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 293 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 196 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 273 bp overlap
MAX 2 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 122 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 291 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 372 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 258 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 96 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 280 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 491 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 491 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 337 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 491 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 491 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 491 bp overlap
ChIP hESC GSE20650.NANOG.hESC 314 bp overlap
ChIP hESC GSE18292.NANOG.hESC 271 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 333 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 293 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 243 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 317 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 258 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 243 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 72 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 402 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 339 bp overlap
ChIP H1 ENCFF833NJP 130 bp overlap
POU5F1 13 datasets
ChIP GM23338 ENCFF333SNB 279 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 491 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 450 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 491 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 279 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 340 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 333 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 281 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 464 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 491 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 491 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 374 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 178 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 125 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 146 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 230 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 292 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 337 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 99 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 309 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 259 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 235 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 262 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 301 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 373 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 225 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 275 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 197 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 197 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 342 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 221 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 491 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 491 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 331 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 449 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 491 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 491 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 491 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 212 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 491 bp overlap
ChIP hESC GSE69479.SOX2.hESC 329 bp overlap
ChIP hESC GSE18292.SOX2.hESC 231 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 407 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 262 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 317 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 332 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 146 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 465 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 306 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 159 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 336 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 429 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 270 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 148 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 380 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 389 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 488 bp overlap
ChIP H1 ENCFF778PAX 152 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 262 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 491 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 464 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 469 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 246 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 416 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap