chr9 : 87,141,141 – 87,141,459

318 bp 94 TFs 1 linked gene

This 318 bp open chromatin element is linked to LINC02872 and is bound by 94 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC02872		7.2 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

94 transcription factors

AR 1 dataset

ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 136 bp overlap

ATF2 1 dataset

ChIP HEK293 ENCSR217HTK.ATF2.HEK293 91 bp overlap

BCL6B 2 datasets

ChIP HEK293 ENCFF555YRB 120 bp overlap

ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 105 bp overlap

BRD3 1 dataset

ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap

BRD4 2 datasets

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 164 bp overlap

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 212 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 318 bp overlap

CHD4 1 dataset

ChIP 501-mel GSE134848.CHD4.501-mel 295 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 230 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 277 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 318 bp overlap

ChIP neural cell ENCFF442QNK 318 bp overlap

EZH2 1 dataset

ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 285 bp overlap

FEZF1 2 datasets

ChIP HEK293 ENCFF528YED 106 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 318 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 69 bp overlap

FOSL1 1 dataset

ChIP BT-549 GSE46166.FOSL1.BT-549 59 bp overlap

FOSL2 1 dataset

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 74 bp overlap

FOXA1 1 dataset

ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 257 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 237 bp overlap

ChIP DE DE-FOXA2-2 304 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 177 bp overlap

GATA6 6 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 318 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 318 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 318 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 318 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 173 bp overlap

HIC1 1 dataset

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 59 bp overlap

INSM2 2 datasets

ChIP HEK293 ENCFF008ZWC 127 bp overlap

ChIP HEK293 ENCSR382GSF.INSM2.HEK293 100 bp overlap

IRF2BP2 1 dataset

ChIP HEK293 GSE124636.IRF2BP2.HEK293 56 bp overlap

JUN 2 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 252 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 281 bp overlap

JUNB 1 dataset

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 278 bp overlap

KLF10 2 datasets

ChIP HEK293 ENCFF326EGX 67 bp overlap

ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 199 bp overlap

KLF16 1 dataset

ChIP HEK293 ENCFF558HSJ 63 bp overlap

KLF5 1 dataset

ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 169 bp overlap

KLF8 1 dataset

ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 67 bp overlap

MAZ 1 dataset

ChIP HEK293 ENCFF994GSG 112 bp overlap

MED1 1 dataset

ChIP U-87MG GSE36354.MED1.U-87MG 117 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 102 bp overlap

MTF2 1 dataset

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 239 bp overlap

MYCN 1 dataset

ChIP RH4 GSE83726.MYCN.RH4 194 bp overlap

MYOD1 4 datasets

ChIP RD GSE137168.MYOD1.RD 270 bp overlap

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 296 bp overlap

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 318 bp overlap

ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 317 bp overlap

MYOG 1 dataset

ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 314 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 220 bp overlap

OSR2 1 dataset

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 85 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCFF016MNJ 98 bp overlap

PDX1 1 dataset

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 197 bp overlap

PKNOX1 1 dataset

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 254 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 145 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 304 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 154 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 318 bp overlap

PRDM4 1 dataset

ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 121 bp overlap

PRDM6 1 dataset

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 75 bp overlap

RAD21 1 dataset

ChIP neural ENCSR198ZYJ.RAD21.neural 178 bp overlap

REST 2 datasets

ChIP HEK293 ENCSR896UBV.REST.HEK293 189 bp overlap

ChIP neural ENCSR000BTV.REST.neural 230 bp overlap

SCRT1 2 datasets

ChIP HEK293 ENCFF513YVP 60 bp overlap

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 144 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 145 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 291 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 318 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 318 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 282 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 318 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 318 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 306 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 150 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 84 bp overlap

SMARCA4 3 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 168 bp overlap

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 57 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 187 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 312 bp overlap

SMC3 1 dataset

ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 71 bp overlap

SP3 1 dataset

ChIP HEK293 ENCFF087XLA 212 bp overlap

SP7 2 datasets

ChIP HEK293 ENCFF733RBE 202 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 254 bp overlap

STAT3 1 dataset

ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 118 bp overlap

TSHZ1 1 dataset

ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 61 bp overlap

YY1 2 datasets

ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 55 bp overlap

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 137 bp overlap

YY2 1 dataset

ChIP HEK293 ENCSR692HSE.YY2.HEK293 80 bp overlap

ZBTB8A 1 dataset

ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 133 bp overlap

ZEB1 2 datasets

ChIP HEK293 ENCFF007TAP 128 bp overlap

ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 181 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 250 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 56 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 79 bp overlap

ZNF101 1 dataset

ChIP HEK293 ENCSR462FWS.ZNF101.HEK293 138 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ZNF18 2 datasets

ChIP HEK293 ENCFF066NGR 215 bp overlap

ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 226 bp overlap

ZNF2 1 dataset

ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 220 bp overlap

ZNF24 1 dataset

ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 156 bp overlap

ZNF324 1 dataset

ChIP HEK293 ENCSR768HOH.ZNF324.HEK293 225 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 136 bp overlap

ZNF341 1 dataset

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 243 bp overlap

ZNF35 1 dataset

ChIP HEK293 GSE76494.ZNF35.HEK293 157 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCFF436CGE 91 bp overlap

ZNF366 2 datasets

ChIP HEK293 ENCFF799ATK 262 bp overlap

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 156 bp overlap

ZNF391 1 dataset

ChIP HEK293 ENCSR210MET.ZNF391.HEK293 168 bp overlap

ZNF398 1 dataset

ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 168 bp overlap

ZNF518A 1 dataset

ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 94 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 191 bp overlap

ZNF561 2 datasets

ChIP HEK293 ENCFF399XKF 86 bp overlap

ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 205 bp overlap

ZNF574 1 dataset

ChIP HEK293 GSE76494.ZNF574.HEK293 97 bp overlap

ZNF580 1 dataset

ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 160 bp overlap

ZNF610 1 dataset

ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 85 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 153 bp overlap

ZNF639 1 dataset

ChIP HEK293 ENCFF971ZNH 113 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCFF282RUS 86 bp overlap

ZNF664 2 datasets

ChIP HEK293 ENCFF343XSW 70 bp overlap

ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 159 bp overlap

ZNF692 2 datasets

ChIP HEK293 ENCFF040AZE 192 bp overlap

ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 131 bp overlap

ZNF778 1 dataset

ChIP HEK293 GSE76494.ZNF778.HEK293 156 bp overlap

ZNF843 1 dataset

ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 218 bp overlap

ZSCAN16 1 dataset

ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 54 bp overlap

ZXDB 2 datasets

ChIP HEK293 ENCFF835SGA 225 bp overlap

ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 89 bp overlap