chr9 : 34,198,345 34,198,774
429 bp 95 TFs 1 linked gene
This 429 bp open chromatin element is linked to RPL35AP2 and is bound by 95 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RPL35AP2 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:34,193,345 – 34,203,774
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AR 6 datasets
ChIP LNCaP GSE117430.AR.LNCaP 195 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 165 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 199 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 334 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 245 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 112 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 184 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 56 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 429 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 309 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BCL11A 11 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 215 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 116 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 208 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 185 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 207 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 58 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 184 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 168 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 166 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 162 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 219 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 331 bp overlap
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 214 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 76 bp overlap
BRD2 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD2.MV4-11_DMSO 144 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 201 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 368 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 179 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 429 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 160 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 186 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 177 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 320 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 178 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 387 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 125 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 133 bp overlap
ESR1 25 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 127 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 181 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 133 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 429 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 321 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 290 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 86 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 119 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 371 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 187 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 187 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 332 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 220 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 295 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 229 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 280 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 148 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 214 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 363 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 323 bp overlap
ChIP breast_tumor_Female_2 GSE104399.ESR1.breast_tumor_Female_2 429 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 190 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 429 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 429 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 229 bp overlap
EVI1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.EVI1.SKH1_RUNX1-EVI1_KD 71 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 240 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 127 bp overlap
EZH2 2 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 191 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 308 bp overlap
FOXA1 16 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 396 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 210 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 195 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 325 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 162 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 199 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 132 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 184 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 287 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 418 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 209 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 187 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 248 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 318 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 429 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 429 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 176 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 85 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 83 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 429 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 140 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 168 bp overlap
GRHL2 9 datasets
ChIP HBE GSE46194.GRHL2.HBE 169 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 176 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 117 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 210 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 330 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 155 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 94 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 100 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 237 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 103 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 148 bp overlap
JUN 3 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 237 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 190 bp overlap
JUND 1 dataset
ChIP Kasumi-1_RUNX1-KO GSE117105.JUND.Kasumi-1_RUNX1-KO 176 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 112 bp overlap
KLF1 1 dataset
ChIP HEK293 GSE76494.KLF1.HEK293 176 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 134 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF542NWJ 305 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 216 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 121 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 134 bp overlap
NFIC 4 datasets
ChIP Ishikawa ENCFF029AAD 223 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 253 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 162 bp overlap
ChIP K562 ENCFF167YID 248 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 130 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 293 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 429 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 259 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 263 bp overlap
POLR2A 4 datasets
ChIP H1 ENCFF566JSR 429 bp overlap
ChIP H1 ENCFF770YBQ 406 bp overlap
ChIP Raji ENCFF613VGX 425 bp overlap
ChIP Raji ENCFF613VGX 324 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 152 bp overlap
POU2F1 4 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 429 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 429 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 361 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 299 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 241 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 429 bp overlap
RELA 14 datasets
ChIP 786-O GSE109953.RELA.786-O 429 bp overlap
ChIP 786-O GSE86092.RELA.786-O 267 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 202 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 142 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 220 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 267 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 155 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 222 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 144 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 208 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 152 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 110 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 203 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 261 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 378 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 124 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 238 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 263 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 127 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 205 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 127 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 244 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 272 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 321 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 323 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 251 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 429 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 429 bp overlap
SRF 3 datasets
ChIP Ishikawa ENCFF992QXM 305 bp overlap
ChIP Ishikawa ENCFF992QXM 154 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 308 bp overlap
STAT3 4 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 182 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 196 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 195 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 164 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 149 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 399 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 122 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 301 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 235 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 159 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 258 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 163 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 250 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 314 bp overlap
ZFP57 2 datasets
Motif DE_12h DE_12h-ZFP57_MA1583.2 7 bp overlap
ChIP hESC GSE115387.ZFP57.hESC 170 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 205 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 398 bp overlap
ZNF449 4 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 348 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 429 bp overlap
ChIP HEK293 GSE76494.ZNF449.HEK293 292 bp overlap
ZNF572 2 datasets
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 130 bp overlap
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 64 bp overlap
ZNF750 2 datasets
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 87 bp overlap
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 105 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 155 bp overlap