chr8 : 24,957,388 24,957,932
544 bp 111 TFs 2 linked genes
This 544 bp open chromatin element is linked to NEFL and ENSG00000272157 and is bound by 111 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
NEFL 667 bp At TSS Proximity
ENSG00000272157 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:24,952,388 – 24,962,932
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 90 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 434 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 273 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 544 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 221 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 194 bp overlap
BRD4 5 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 222 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 258 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 140 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 103 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 244 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 544 bp overlap
ChIP A549 ENCFF656LMW 161 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 326 bp overlap
CLOCK 2 datasets
ChIP BA10_1 GSE96659.CLOCK.BA10_1 147 bp overlap
ChIP BA40_4 GSE96659.CLOCK.BA40_4 59 bp overlap
CTCF 1 dataset
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 72 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF093OYK 370 bp overlap
ChIP BLaER1 ENCFF335XTP 258 bp overlap
ChIP BLaER1 ENCFF364PUR 283 bp overlap
ChIP BLaER1 ENCFF364PUR 205 bp overlap
ChIP BLaER1 ENCFF896HSY 360 bp overlap
E2F1 3 datasets
ChIP HMEC-1 GSE62425.E2F1.HMEC-1 74 bp overlap
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 119 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 169 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 325 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 544 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 215 bp overlap
ChIP H1 ENCFF451BLH 153 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 192 bp overlap
EZH2 35 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 84 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 395 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 461 bp overlap
ChIP GM12878 ENCFF635TDF 291 bp overlap
ChIP GM23248 ENCFF404ZHM 74 bp overlap
ChIP GM23248 ENCFF404ZHM 355 bp overlap
ChIP GM23248 ENCFF404ZHM 544 bp overlap
ChIP GM23338 ENCFF613YON 181 bp overlap
ChIP H1 ENCFF232NZA 544 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 310 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 201 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 200 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 544 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 432 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 122 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 544 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 544 bp overlap
ChIP SK-N-MC ENCFF434OHW 187 bp overlap
ChIP SK-N-MC ENCFF434OHW 520 bp overlap
ChIP SK-N-MC ENCFF434OHW 275 bp overlap
ChIP SK-N-MC ENCFF674XUJ 187 bp overlap
ChIP SK-N-MC ENCFF674XUJ 516 bp overlap
ChIP T98G GSE112240.EZH2.T98G 533 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 544 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 544 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 544 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 544 bp overlap
ChIP fibroblast of lung ENCFF479BAW 473 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 544 bp overlap
ChIP hESC GSE113817.EZH2.hESC 223 bp overlap
ChIP hepatocyte ENCFF552DZB 275 bp overlap
ChIP keratinocyte ENCFF070STK 535 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 109 bp overlap
ChIP neural progenitor cell ENCFF018MKA 544 bp overlap
ChIP neural progenitor cell ENCFF472NFV 544 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 169 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 76 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
ChIP SK-N-SH ENCFF124KVL 255 bp overlap
FOXP1 2 datasets
ChIP WTC11 ENCFF338WGC 525 bp overlap
ChIP neural-progenitor GSE62718.FOXP1.neural-progenitor 78 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 230 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 380 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 288 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 318 bp overlap
HDAC2 4 datasets
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 174 bp overlap
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 179 bp overlap
ChIP A549 ENCFF195CCI 181 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 421 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 544 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 339 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 324 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 212 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 544 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 544 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 461 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 355 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 544 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 320 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 532 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 419 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 219 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 470 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 154 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 275 bp overlap
MAF 1 dataset
Motif DE_24h DE_24h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_24h DE_24h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
Motif DE_24h DE_24h-MAFK_MA0496.4 10 bp overlap
MAX 8 datasets
ChIP A549 ENCFF310XGQ 321 bp overlap
ChIP H1 ENCFF601FOM 247 bp overlap
ChIP H1 ENCFF914VQY 178 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 544 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 198 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 221 bp overlap
ChIP endothelial cell of umbilical vein ENCFF100YIN 193 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 142 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 176 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 317 bp overlap
ChIP neural cell ENCFF623HQN 532 bp overlap
MYC 7 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 171 bp overlap
ChIP H1 ENCFF794ZJT 224 bp overlap
ChIP HFF_OHT GSE65544.MYC.HFF_OHT 98 bp overlap
ChIP HFF_OHT GSE65544.MYC.HFF_OHT 364 bp overlap
ChIP HFF_OHT_SHBPTF GSE65544.MYC.HFF_OHT_SHBPTF 163 bp overlap
ChIP HT-1080 GSE86504.MYC.HT-1080 300 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 136 bp overlap
MYCN 10 datasets
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 342 bp overlap
ChIP BE2C GSE80151.MYCN.BE2C 544 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 164 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 220 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 544 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 116 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 531 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 544 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 315 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 503 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_24h DE_24h-NFATC4_MA1525.3 9 bp overlap
NFE2L1 2 datasets
ChIP WTC11 ENCFF644BPU 377 bp overlap
ChIP WTC11 ENCFF644BPU 283 bp overlap
NRF1 1 dataset
ChIP HepG2 ENCFF694NVY 161 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 320 bp overlap
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 480 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 279 bp overlap
PCGF2 3 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 544 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 197 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 231 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 544 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 108 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 292 bp overlap
PRDM1 1 dataset
Motif DE_24h DE_24h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 393 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 232 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 182 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 384 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 544 bp overlap
ChIP H1 ENCFF239FFS 384 bp overlap
ChIP H1 ENCFF239FFS 183 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 544 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 542 bp overlap
RUNX1 2 datasets
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 206 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 98 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 440 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 304 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 215 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 302 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 77 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 333 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 177 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 544 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 201 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 173 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 287 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 544 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 464 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 544 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 233 bp overlap
SUZ12 11 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 185 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 425 bp overlap
ChIP H1 ENCFF881NFR 544 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 503 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 544 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 482 bp overlap
ChIP NT2/D1 ENCFF574SXS 482 bp overlap
ChIP NT2/D1 ENCFF574SXS 282 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 495 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 241 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
TBP 3 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 259 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 312 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 219 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 441 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 316 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 316 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 204 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 446 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 539 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 416 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 382 bp overlap
ChIP HEK293 ENCFF752TCU 298 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 485 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 152 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 131 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 270 bp overlap
ZNF2 3 datasets
ChIP HEK293 ENCFF641ICT 347 bp overlap
ChIP HEK293 ENCFF641ICT 475 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 500 bp overlap
ZNF223 1 dataset
ChIP HEK293 ENCFF408UAU 290 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 472 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCFF937QHI 357 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 287 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 127 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 217 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 113 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF768 2 datasets
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
ChIP HEK293 ENCFF579QSI 269 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 119 bp overlap