chr1 : 115,647,204 115,647,416
212 bp 94 TFs 1 linked gene
This 212 bp open chromatin element is linked to VANGL1 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
VANGL1 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,642,204 – 115,652,416
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 169 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 129 bp overlap
ChIP K562 ENCFF980NSF 146 bp overlap
ATF2 2 datasets
ChIP K-562 ENCSR869IUD.ATF2.K-562 93 bp overlap
ChIP K562 ENCFF139ZZG 148 bp overlap
ATF3 4 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 79 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 212 bp overlap
ChIP K562 ENCFF604FPV 206 bp overlap
ChIP K562 ENCFF965VXT 86 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 212 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 188 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 84 bp overlap
BRCA1 1 dataset
ChIP HeLa-S3 ENCFF218GPC 94 bp overlap
BRD4 3 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 144 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 172 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 143 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 201 bp overlap
ChIP K562 ENCFF673OEZ 212 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 142 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 177 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 172 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 212 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 212 bp overlap
CREM 1 dataset
ChIP K562 ENCFF180STA 84 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 58 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 129 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 128 bp overlap
ChIP K562 ENCFF191BFW 187 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 212 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF496AKI 80 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCFF089VPQ 104 bp overlap
ChIP HeLa-S3 ENCFF245KNK 196 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 187 bp overlap
ERG 3 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 90 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 148 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 209 bp overlap
ESR1 8 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 147 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 94 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 106 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 123 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 74 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 147 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 52 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 97 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 65 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 64 bp overlap
EZH2 2 datasets
ChIP Jurkat GSE147198.EZH2.Jurkat 203 bp overlap
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 212 bp overlap
FOS 7 datasets
ChIP HeLa-S3 ENCFF829XRF 127 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 205 bp overlap
ChIP K-562 ENCSR000DKB.FOS.K-562 89 bp overlap
ChIP MCF-7 ENCFF282FWZ 149 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 181 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 165 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 132 bp overlap
FOSL1 4 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 172 bp overlap
ChIP K-562 ENCSR000BMV.FOSL1.K-562 87 bp overlap
ChIP K562 ENCFF455MKD 212 bp overlap
ChIP K562 ENCFF728OTE 109 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 195 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 172 bp overlap
ChIP DE DE-FOXA2-1 212 bp overlap
ChIP DE DE-FOXA2-2 212 bp overlap
GABPA 2 datasets
ChIP K-562 ENCSR290MUH.GABPA.K-562 73 bp overlap
ChIP K562 ENCFF139LXS 212 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 130 bp overlap
ChIP K562 ENCFF015GDS 51 bp overlap
GATA1 5 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 173 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 140 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 138 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 51 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 63 bp overlap
GATA2 5 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 212 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 142 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 138 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 212 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 128 bp overlap
GATA3 6 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 212 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 212 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 198 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 186 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 134 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 75 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-GATA4-1 212 bp overlap
ChIP DE DE-GATA4-2 212 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 212 bp overlap
ChIP foregut GSE117136.GATA4.foregut 191 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 212 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 212 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 212 bp overlap
ChIP AGS GSE51936.GATA6.AGS 96 bp overlap
ChIP DE DE-GATA6-1 212 bp overlap
ChIP DE DE-GATA6-2 212 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 212 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 212 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 212 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 212 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 212 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 212 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 212 bp overlap
ChIP foregut GSE117136.GATA6.foregut 212 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 147 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 208 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 161 bp overlap
GFI1B 1 dataset
ChIP SET-2 GSE121424.GFI1B.SET-2 153 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 212 bp overlap
ChIP K562 ENCFF968WBH 212 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 174 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 121 bp overlap
ChIP K562 ENCFF195BET 196 bp overlap
ID3 2 datasets
ChIP K-562 ENCSR005NMT.ID3.K-562 212 bp overlap
ChIP K562 ENCFF170RNI 212 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 212 bp overlap
ChIP K562 ENCFF348IBL 212 bp overlap
JUN 8 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 150 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 82 bp overlap
ChIP HeLa-S3 ENCFF668QVP 137 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 91 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 68 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 85 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 133 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 61 bp overlap
JUNB 4 datasets
ChIP HAEC GSE89970.JUNB.HAEC 109 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 170 bp overlap
ChIP K562 ENCFF388SEP 164 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 54 bp overlap
JUND 5 datasets
ChIP HeLa-S3 ENCFF642OHL 164 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 115 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 122 bp overlap
ChIP K562 ENCFF336RCR 202 bp overlap
ChIP K562 ENCFF830LVJ 110 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 164 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 61 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 162 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 158 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 73 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 163 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 156 bp overlap
MXI1 1 dataset
ChIP HeLa-S3 ENCFF947VEL 139 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 149 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 212 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 209 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 114 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 133 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 144 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 163 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 125 bp overlap
NFYB 1 dataset
ChIP HeLa-S3 ENCFF854TNJ 134 bp overlap
NR2C1 4 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 183 bp overlap
ChIP K-562 ENCSR742IDN.NR2C1.K-562 179 bp overlap
ChIP K562 ENCFF239KMA 212 bp overlap
ChIP K562 ENCFF568JLK 134 bp overlap
NR2C2 2 datasets
ChIP K-562 ENCSR750LYM.NR2C2.K-562 166 bp overlap
ChIP K562 ENCFF750AXF 212 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 212 bp overlap
ChIP K562 ENCFF221HJH 136 bp overlap
NR2F2 5 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 212 bp overlap
ChIP K562 ENCFF004YPK 171 bp overlap
ChIP K562 ENCFF004YPK 212 bp overlap
ChIP liver ENCFF565JGD 203 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 188 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 201 bp overlap
ChIP K562 ENCFF674RQA 212 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 87 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 77 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 212 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 212 bp overlap
ChIP K562 ENCFF236IUS 204 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 198 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 144 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 141 bp overlap
RELA 4 datasets
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 100 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 56 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 61 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 114 bp overlap
RFX1 2 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 110 bp overlap
ChIP K562 ENCFF809XVG 53 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCFF703XPB 125 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 212 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 139 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 90 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 212 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 212 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 212 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 212 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 144 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 77 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 212 bp overlap
ChIP K562 ENCFF506JCB 212 bp overlap
ChIP K562 ENCFF506JCB 105 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 127 bp overlap
ChIP HeLa-S3 ENCFF971JGA 212 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 115 bp overlap
SMARCE1 3 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 202 bp overlap
ChIP K562 ENCFF690CFF 212 bp overlap
ChIP K562 ENCFF690CFF 212 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 212 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 212 bp overlap
ChIP K562 ENCFF059YCJ 212 bp overlap
STAT3 1 dataset
ChIP HeLa-S3 ENCFF655DGU 113 bp overlap
TAL1 5 datasets
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 131 bp overlap
ChIP K562 ENCFF661CCK 207 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 212 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 175 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 166 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 74 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 212 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 212 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 83 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR322CFO.ZEB2.K-562 146 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 147 bp overlap
ChIP K562 ENCFF547OSS 212 bp overlap