chr6 : 90,494,141 90,494,851
710 bp 92 TFs 2 linked genes
This 710 bp open chromatin element is linked to MAP3K7 and BACH2 and is bound by 92 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MAP3K7 92.6 kb Distal Multiome
BACH2 276.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:90,489,141 – 90,499,851
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 4 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 369 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 222 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 204 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 196 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 640 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 696 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 148 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 520 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 224 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 201 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 564 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 221 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 299 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF128BID 159 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 196 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 231 bp overlap
ChIP H1 ENCFF126NLU 399 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 248 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 710 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 207 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 509 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 427 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 212 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF245JDF 265 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 145 bp overlap
ChIP hESC GSE26097.EOMES.hESC 173 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 204 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 437 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF472NFV 70 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 293 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 187 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 401 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 384 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 282 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 345 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 350 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 398 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 464 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 455 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 466 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 402 bp overlap
GLI3 2 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif ES_0h ES_0h-GLI3_MA1491.3 15 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 525 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 220 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 395 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 81 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 580 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 352 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 270 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 524 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 435 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 502 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 690 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 313 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 407 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 227 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 705 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 652 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 198 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 710 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 699 bp overlap
ChIP hESC GSE20650.NANOG.hESC 266 bp overlap
ChIP hESC GSE18292.NANOG.hESC 109 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 206 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 215 bp overlap
NR5A1 2 datasets
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 148 bp overlap
POU5F1 8 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 574 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 710 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 241 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 206 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 621 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 235 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 206 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 276 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 260 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 710 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 616 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 375 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 273 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 231 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 317 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 320 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 460 bp overlap
SMARCA4 8 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 455 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 418 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 591 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 613 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 557 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 368 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 403 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 364 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 314 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 304 bp overlap
SMARCC1 4 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 329 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 256 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 424 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 381 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 205 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 710 bp overlap
ChIP NPC GSE122631.SOX2.NPC 205 bp overlap
ChIP hESC GSE18292.SOX2.hESC 106 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 341 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 245 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 258 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 231 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 292 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 302 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 287 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 382 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 405 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 185 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 455 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 226 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 650 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 481 bp overlap
TRIM28 2 datasets
ChIP WIBR3 GSE84382.TRIM28.WIBR3 158 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 299 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
YAP1 1 dataset
ChIP WA01 GSE99202.YAP1.WA01 271 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 186 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 249 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 415 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 401 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap