chr6 : 47,181,788 47,182,605
817 bp 96 TFs 2 linked genes
This 817 bp open chromatin element is linked to TNFRSF21 and CD2AP and is bound by 96 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TNFRSF21 127.7 kb Distal Multiome
CD2AP 295.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:47,176,788 – 47,187,605
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE80256.AR.LNCaP 234 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 143 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 101 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 113 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 77 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 122 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 233 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 234 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 264 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 170 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE44236.ARNTL.U2OS 197 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 275 bp overlap
ASH2L 1 dataset
ChIP VCaP GSE60841.ASH2L.VCaP 92 bp overlap
Atf3 1 dataset
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 180 bp overlap
BNC2 1 dataset
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 178 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 210 bp overlap
BRD4 16 datasets
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 288 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 293 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 274 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 357 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 218 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 101 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 179 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 271 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 160 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 183 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 365 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 373 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 181 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 140 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 75 bp overlap
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 107 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 272 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 81 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 324 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 371 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 62 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 103 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 299 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 84 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 72 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 216 bp overlap
ChIP BLaER1 ENCFF896HSY 237 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 65 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 290 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 299 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 323 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 229 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 409 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 342 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 372 bp overlap
ESR1 15 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 218 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 74 bp overlap
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 255 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 124 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 153 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 106 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 107 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 147 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 98 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 189 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 133 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 81 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 59 bp overlap
ChIP MCF-7_vehicle_4h GSE99626.ESR1.MCF-7_vehicle_4h 62 bp overlap
ChIP breast_tumor_Male_9 GSE104399.ESR1.breast_tumor_Male_9 170 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 82 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 56 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 77 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 78 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 107 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 61 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 52 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 95 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 85 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 76 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 73 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 214 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 173 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 644 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 143 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 144 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 105 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 51 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 97 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 61 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 141 bp overlap
ChIP DE DE-FOXA2-1 768 bp overlap
ChIP DE DE-FOXA2-2 795 bp overlap
FOXB1 2 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
GATA1 5 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 200 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 157 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 157 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 817 bp overlap
ChIP DE DE-GATA4-2 817 bp overlap
ChIP foregut GSE117136.GATA4.foregut 485 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 675 bp overlap
ChIP DE DE-GATA6-2 817 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 271 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 779 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 354 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 654 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 183 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 145 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 702 bp overlap
ChIP foregut GSE117136.GATA6.foregut 439 bp overlap
GLI3 2 datasets
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
GRHL2 2 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 137 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 175 bp overlap
Gli1 2 datasets
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_48h DE_48h-Gli2_MA0734.4 9 bp overlap
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
HDAC1 4 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 55 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 102 bp overlap
ChIP PC-3 GSE147455.HDAC1.PC-3 238 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 176 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 148 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 389 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 217 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 199 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 82 bp overlap
HOXB13 5 datasets
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 196 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 86 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 53 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 88 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 169 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 256 bp overlap
JUN 2 datasets
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 109 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 88 bp overlap
Jun 1 dataset
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 546 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 341 bp overlap
LHX6 2 datasets
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 141 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 80 bp overlap
MED1 3 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 227 bp overlap
ChIP VCaP GSE148358.MED1.VCaP 244 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 357 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS3 2 datasets
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 56 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 240 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 210 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 199 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 274 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 467 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 159 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 163 bp overlap
NRL 2 datasets
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 81 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 53 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 108 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 468 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 456 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 223 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 51 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 320 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 186 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 247 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 164 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 202 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 206 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 110 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 113 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 191 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 378 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 571 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
STAT3 6 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 161 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 149 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 197 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 146 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 211 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 320 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TEAD4 3 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 88 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 70 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 193 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 156 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 101 bp overlap
YY1AP1 5 datasets
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 59 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 275 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 174 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 201 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 138 bp overlap
Yy1 2 datasets
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZNF217 2 datasets
ChIP MCF-7 ENCFF299BWK 97 bp overlap
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 174 bp overlap