chr6 : 40,585,636 40,586,025
389 bp 94 TFs 1 linked gene
This 389 bp open chromatin element is linked to LRFN2 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRFN2 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:40,580,636 – 40,591,025
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 234 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 389 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 340 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 260 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 389 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 250 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 132 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 107 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 163 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 337 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 256 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 116 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 281 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 279 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 175 bp overlap
ChIP BLaER1 ENCFF093OYK 169 bp overlap
ChIP BLaER1 ENCFF274GAT 200 bp overlap
ChIP BLaER1 ENCFF364PUR 208 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 223 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 162 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 304 bp overlap
EZH2 1 dataset
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 186 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 156 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 225 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 389 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 355 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 389 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 242 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 308 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 340 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 389 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 389 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 108 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 155 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 299 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 282 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 142 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 238 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 301 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 389 bp overlap
IKZF3 2 datasets
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 218 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 80 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 159 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 389 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 389 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 236 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 389 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 199 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 245 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 185 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 95 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 353 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 247 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 389 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 239 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 221 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 359 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 241 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 311 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 204 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 362 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 300 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 246 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 389 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 320 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 290 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 293 bp overlap
MYOD1 3 datasets
ChIP RH4 GSE83726.MYOD1.RH4 389 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 107 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 131 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 389 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 192 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 199 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 128 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 317 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 160 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 377 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 365 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 389 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 307 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 163 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 273 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 389 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 75 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 389 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 389 bp overlap
REST 3 datasets
ChIP HEK293 ENCFF073DOT 65 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 208 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
RFX5 1 dataset
ChIP MCF-7 ENCFF983ILY 236 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 240 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 85 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 279 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 297 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 304 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 389 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 389 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 389 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 342 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 153 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 194 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 227 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 310 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 288 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 150 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 262 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 167 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 186 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 238 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 183 bp overlap
TCF3 2 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 167 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 231 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 82 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 287 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 362 bp overlap
ChIP H1 ENCFF778PAX 117 bp overlap
TP53 5 datasets
ChIP H9 GSE142050.TP53.H9 304 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 191 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 267 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 278 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 276 bp overlap
TP63 2 datasets
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 152 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 233 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 161 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 161 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 357 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 269 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 116 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 139 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 102 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 155 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 95 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 165 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 389 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 57 bp overlap
ChIP HEK293 ENCFF336CWQ 57 bp overlap
ChIP K562 ENCFF640RNA 141 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 105 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 389 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 389 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 179 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 140 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 309 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 203 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 356 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 234 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 339 bp overlap