chr6 : 21,741,309 21,741,554
245 bp 100 TFs 0 linked genes
This 245 bp open chromatin element has no linked target genes and is bound by 100 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:21,736,309 – 21,746,554
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 245 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 176 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 233 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 176 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 119 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 125 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 71 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 219 bp overlap
BRD4 12 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 245 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 245 bp overlap
ChIP HUVEC-C_modGFP GSE93030.BRD4.HUVEC-C_modGFP 144 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 70 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 245 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 227 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 245 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 204 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 245 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 245 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 245 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 215 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 155 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 122 bp overlap
CHD7 3 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 206 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 245 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 245 bp overlap
CREB5 1 dataset
ChIP SK-N-SH ENCFF144PMI 86 bp overlap
CTCF 13 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 174 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 160 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 197 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 209 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 195 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 181 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 192 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 193 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 171 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 140 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 86 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 111 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 187 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 175 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 79 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 111 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 109 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 141 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 51 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 95 bp overlap
FOXA1 4 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 245 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 245 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 70 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 167 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 101 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 194 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 245 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 245 bp overlap
HAND2 3 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 245 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 245 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 245 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 223 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 245 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 148 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 148 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 245 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 245 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 245 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 177 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 150 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 245 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 60 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 102 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 245 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 163 bp overlap
ChIP H1 ENCFF747ZPQ 212 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 245 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 188 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 245 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 245 bp overlap
ChIP hESC GSE20650.NANOG.hESC 175 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 102 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 180 bp overlap
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 245 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 92 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 245 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 2 datasets
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 123 bp overlap
POU3F2 2 datasets
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
ChIP hiPSC GSE149017.POU3F2.hiPSC 95 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 9 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 198 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 228 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 245 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 245 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 231 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 186 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 245 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 245 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 211 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 245 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 104 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 58 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 245 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 79 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 245 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 245 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 53 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 245 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 206 bp overlap
ChIP neural ENCSR000BTV.REST.neural 186 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 54 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Rarb 1 dataset
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 245 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 245 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 245 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 245 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 245 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 210 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 72 bp overlap
SMARCA4 7 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 178 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 71 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 245 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 245 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 245 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 133 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 245 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 245 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 93 bp overlap
SMARCC1 8 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 188 bp overlap
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 152 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 245 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 93 bp overlap
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 233 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 245 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 82 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 122 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 70 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 245 bp overlap
ChIP NPC GSE122631.SOX2.NPC 245 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 186 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 210 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 220 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 131 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 207 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 218 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 205 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 164 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 245 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 232 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 232 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 143 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 101 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 196 bp overlap
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 196 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 194 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 245 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 187 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 185 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap