chr6 : 10,558,651 – 10,558,899
248 bp 116 TFs 1 linked gene
This 248 bp open chromatin element is linked to GCNT2 and is bound by 116 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GCNT2 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:10,553,651 – 10,563,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 114 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 167 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 248 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 170 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 216 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 219 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 214 bp overlap
BRD2 1 dataset
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 159 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 188 bp overlap
ChIP hESC GSE33281.BRD4.hESC 167 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 95 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 147 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 111 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 175 bp overlap
ESR1 2 datasets
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 160 bp overlap
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 248 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 50 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXK1 2 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
ChIP WTC11 ENCFF875IGU 248 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 245 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 248 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 248 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 177 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 173 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 203 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 115 bp overlap
HSF1 3 datasets
ChIP HCT-116_A10_43 GSE152144.HSF1.HCT-116_A10_43 208 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 215 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 123 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 210 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 236 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 127 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 183 bp overlap
KDM5B 1 dataset
ChIP WA01 ENCSR000AUR.KDM5B.WA01 171 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 142 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 168 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 248 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 248 bp overlap
ChIP WTC11 ENCFF223QFY 248 bp overlap
MED1 2 datasets
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 125 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 248 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 158 bp overlap
MXI1 4 datasets
ChIP H1 ENCFF963FZS 248 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 127 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 230 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 248 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 167 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 183 bp overlap
ChIP H1 ENCFF747ZPQ 229 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 248 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 245 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 248 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 248 bp overlap
ChIP hESC GSE18292.NANOG.hESC 70 bp overlap
ChIP hESC GSE20650.NANOG.hESC 129 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 204 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 162 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 248 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 248 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 248 bp overlap
POLR2A 12 datasets
ChIP GM23338 ENCFF450WCS 193 bp overlap
ChIP H1 ENCFF566JSR 248 bp overlap
ChIP H1 ENCFF833NJP 248 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 248 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 248 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 248 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 248 bp overlap
ChIP prostate gland ENCFF881OMH 248 bp overlap
ChIP sigmoid colon ENCFF748YVT 248 bp overlap
ChIP sigmoid colon ENCFF754JQR 248 bp overlap
ChIP stomach ENCFF820WZN 108 bp overlap
ChIP transverse colon ENCFF610RWV 248 bp overlap
POU5F1 8 datasets
ChIP BG03 GSE21614.POU5F1.BG03 191 bp overlap
ChIP GM23338 ENCFF333SNB 248 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 248 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 105 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 79 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 248 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 145 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 227 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 228 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 247 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 127 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 201 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 248 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 248 bp overlap
ChIP H1 ENCFF896IJG 221 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 233 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 248 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 186 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 177 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 239 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 183 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 153 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 248 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 164 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 72 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 248 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 237 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 248 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 248 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 248 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 248 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 206 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 248 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 248 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 203 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
ChIP WTC11 ENCFF688PEU 248 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 141 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 248 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 248 bp overlap
TBP 4 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 202 bp overlap
ChIP hESC GSE122298.TBP.hESC 248 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 232 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 223 bp overlap
TCF12 3 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 221 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 248 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 248 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 248 bp overlap
ChIP H1 ENCFF778PAX 211 bp overlap
ChIP WTC11 ENCFF114TZS 248 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 248 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 233 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 248 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 248 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 121 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 146 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 248 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 109 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 248 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 248 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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