chr5 : 138,077,708 138,078,745
1,037 bp 161 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to WNT8A and is bound by 161 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
WNT8A 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:138,072,708 – 138,083,745
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
161 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_24h DE_24h-ALX3_MA0634.2 6 bp overlap
AR 1 dataset
ChIP VCaP GSE148358.AR.VCaP 137 bp overlap
ARGFX 1 dataset
Motif DE_24h DE_24h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1100.3 8 bp overlap
Alx1 1 dataset
Motif DE_24h DE_24h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_24h DE_24h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_24h DE_24h-Arx_MA0874.2 10 bp overlap
Ascl2 1 dataset
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
CTCF 26 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 55 bp overlap
ChIP A549 ENCFF669BWC 60 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 172 bp overlap
ChIP C4-2B ENCFF821XVN 96 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 89 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 99 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 142 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 346 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 126 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 264 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 559 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 80 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 113 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 56 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 395 bp overlap
ChIP RWPE2 ENCFF911IEE 105 bp overlap
ChIP astrocyte ENCFF558APA 110 bp overlap
ChIP brain ENCFF067KUH 68 bp overlap
ChIP endothelial cell ENCFF663LIE 96 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 101 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 60 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 224 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 333 bp overlap
ChIP natural killer cell ENCFF517SNI 116 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 109 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 264 bp overlap
DRGX 1 dataset
Motif DE_24h DE_24h-DRGX_MA1481.2 6 bp overlap
DUXA 1 dataset
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 162 bp overlap
EBF1 1 dataset
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
EMX1 1 dataset
Motif DE_24h DE_24h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_24h DE_24h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_24h DE_24h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_24h DE_24h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 325 bp overlap
ERG 3 datasets
ChIP VCaP GSE49091.ERG.VCaP 175 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 161 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 199 bp overlap
ESX1 1 dataset
Motif DE_24h DE_24h-ESX1_MA0644.3 7 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 541 bp overlap
EVX1 1 dataset
Motif DE_24h DE_24h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_24h DE_24h-EVX2_MA0888.2 6 bp overlap
Ebf4 1 dataset
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 241 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 327 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 269 bp overlap
ChIP DE DE-GATA6-2 392 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 656 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 582 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 777 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 535 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 729 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 746 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 458 bp overlap
GBX1 1 dataset
Motif DE_24h DE_24h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif DE_24h DE_24h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_24h DE_24h-GSX2_MA0893.3 7 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 238 bp overlap
HNF4A 1 dataset
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
HOXA1 1 dataset
Motif DE_24h DE_24h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_24h DE_24h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_24h DE_24h-HOXA5_MA0158.2 8 bp overlap
HOXB1 1 dataset
Motif DE_24h DE_24h-HOXB1_MA2093.1 7 bp overlap
HOXB13 1 dataset
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 155 bp overlap
HOXB2 1 dataset
Motif DE_24h DE_24h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_24h DE_24h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_24h DE_24h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_24h DE_24h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_24h DE_24h-HOXD3_MA0912.2 8 bp overlap
INSM1 1 dataset
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
ISX 1 dataset
Motif DE_24h DE_24h-ISX_MA0654.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 396 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 654 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 348 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 547 bp overlap
KLF4 3 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
LBX1 1 dataset
Motif DE_24h DE_24h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_24h DE_24h-LHX5_MA1519.2 7 bp overlap
LHX6 3 datasets
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
Motif DE_24h DE_24h-LHX6_MA0658.2 8 bp overlap
Motif DE_24h DE_24h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_24h DE_24h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_24h DE_24h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_24h DE_24h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_24h DE_24h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_24h DE_24h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_24h DE_24h-Lhx8_MA0705.2 6 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 172 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 426 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 282 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_24h DE_24h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_24h DE_24h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_24h DE_24h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_24h DE_24h-MNX1_MA0707.3 6 bp overlap
MYF5 1 dataset
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 412 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 193 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_24h DE_24h-NHLH2_MA1529.2 16 bp overlap
NKX6-2 1 dataset
Motif DE_24h DE_24h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_24h DE_24h-NOTO_MA0710.2 7 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 154 bp overlap
NR4A1 1 dataset
Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap
Nr2e1 1 dataset
Motif DE_24h DE_24h-Nr2e1_MA0676.1 9 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PAX4 1 dataset
Motif DE_24h DE_24h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif DE_24h DE_24h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 585 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 347 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_24h DE_24h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_24h DE_24h-PRRX2_MA0075.4 7 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
RAD21 6 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 248 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 223 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 187 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 265 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 84 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 107 bp overlap
RAX2 1 dataset
Motif DE_24h DE_24h-RAX2_MA0717.2 6 bp overlap
Rarb 1 dataset
Motif DE_24h DE_24h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
SHOX 1 dataset
Motif DE_24h DE_24h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 692 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 580 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 475 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 577 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 516 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 345 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 644 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 53 bp overlap
SOX10 1 dataset
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
SP4 1 dataset
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 154 bp overlap
Shox2 1 dataset
Motif DE_24h DE_24h-Shox2_MA0720.2 6 bp overlap
Sox6 1 dataset
Motif DE_24h DE_24h-Sox6_MA0515.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 391 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 459 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TFAP2A 1 dataset
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
TFAP4 1 dataset
Motif DE_24h DE_24h-TFAP4_MA0691.1 10 bp overlap
TLX2 1 dataset
Motif DE_24h DE_24h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
UNCX 1 dataset
Motif DE_24h DE_24h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_24h DE_24h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_24h DE_24h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_24h DE_24h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_24h DE_24h-VSX2_MA0726.2 7 bp overlap
ZBTB6 1 dataset
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZNF135 1 dataset
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 229 bp overlap
ZNF148 2 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF263 1 dataset
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF281 4 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 90 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF454 1 dataset
Motif DE_24h DE_24h-ZNF454_MA1712.2 17 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 137 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
ZNF675 1 dataset
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
ZNF768 1 dataset
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 209 bp overlap