chr3 : 77,147,828 77,148,413
585 bp 130 TFs 0 linked genes
This 585 bp open chromatin element has no linked target genes and is bound by 130 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:77,142,828 – 77,153,413
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 315 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 326 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 459 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 250 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 122 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD2 3 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 227 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 298 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 257 bp overlap
BRD4 9 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 207 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 181 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 514 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 514 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 296 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 412 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 234 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 309 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 149 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 252 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 481 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 196 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 225 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000BLI.E2F6.K-562 140 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 353 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 201 bp overlap
ETS1 1 dataset
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 206 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 365 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 530 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 282 bp overlap
FLI1 6 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 368 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 329 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 198 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 310 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 351 bp overlap
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
FOS 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 297 bp overlap
FOSL1 2 datasets
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 305 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 285 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 340 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 393 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 152 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 196 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 138 bp overlap
FOXA2 2 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 318 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 269 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 237 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 227 bp overlap
HNF4A 3 datasets
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 116 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 447 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 326 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 303 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 167 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 379 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 310 bp overlap
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 460 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 169 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 576 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 327 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 213 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 121 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 566 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 464 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 445 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 510 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 423 bp overlap
NCOR2 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 267 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 205 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR338MMB.NR2F2.liver 177 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 504 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 173 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 148 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 3 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCFF174WDB 337 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 439 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 427 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 556 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 175 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 549 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 343 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 205 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 432 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 188 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 338 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 226 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 172 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 123 bp overlap
SMARCA4 7 datasets
ChIP NGP GSE134626.SMARCA4.NGP 347 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 207 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 207 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 281 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 585 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 423 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 508 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 466 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 206 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 221 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 433 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 345 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 185 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 585 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 271 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 160 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 467 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 140 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 264 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TP53 1 dataset
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
TP63 3 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 392 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 195 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 184 bp overlap
TP73 1 dataset
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 142 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 149 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 535 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 338 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 141 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 103 bp overlap
ChIP HEK293 ENCFF784SLD 266 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 582 bp overlap
ZNF558 1 dataset
ChIP HEK293T GSE78099.ZNF558.HEK293T 392 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 359 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 537 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 434 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 320 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap