chr3 : 55,489,460 55,489,744
284 bp 72 TFs 2 linked genes
This 284 bp open chromatin element is linked to WNT5A-AS1 and WNT5A and is bound by 72 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
WNT5A-AS1 1.8 kb Proximal Proximity
WNT5A 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:55,484,460 – 55,494,744
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 107 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 67 bp overlap
BCL6 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 82 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 106 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 106 bp overlap
BRD4 4 datasets
ChIP LPS141 GSE111253.BRD4.LPS141 284 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 233 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 228 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 71 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 184 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCFF078QRQ 155 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 121 bp overlap
CTCF 6 datasets
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 65 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 154 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 122 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 150 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 284 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 52 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 199 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 284 bp overlap
ChIP H1 ENCFF785DWK 79 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 240 bp overlap
ESR1 1 dataset
ChIP MCF-7_Tamoxifen GSE115607.ESR1.MCF-7_Tamoxifen 96 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 138 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 164 bp overlap
EZH2 13 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 283 bp overlap
ChIP H1 ENCFF232NZA 211 bp overlap
ChIP H1 ENCFF232NZA 118 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 96 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 284 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 250 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 284 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 284 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 118 bp overlap
ChIP neural progenitor cell ENCFF018MKA 111 bp overlap
ChIP neural progenitor cell ENCFF018MKA 284 bp overlap
ChIP neural progenitor cell ENCFF018MKA 284 bp overlap
ChIP neural progenitor cell ENCFF018MKA 270 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 284 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 102 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 284 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 207 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 254 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCFF446EIF 157 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 164 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 153 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 184 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCFF008ZWC 74 bp overlap
JARID2 3 datasets
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 229 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 284 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 284 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 284 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 199 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 208 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 66 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 171 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 161 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 219 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 80 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 65 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 209 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 156 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 199 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 208 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 134 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 96 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 284 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 129 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 284 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 284 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 284 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 284 bp overlap
RAD21 1 dataset
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 123 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 70 bp overlap
ChIP H1 ENCFF905HFL 284 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 284 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 220 bp overlap
ChIP H1 ENCFF239FFS 284 bp overlap
ChIP H1 ENCFF239FFS 194 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 284 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 172 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 201 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 284 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 284 bp overlap
SMARCC1 3 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 234 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 284 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 284 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 284 bp overlap
SP3 1 dataset
ChIP HEK293 ENCFF087XLA 111 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 284 bp overlap
ChIP H1 ENCFF881NFR 90 bp overlap
ChIP H1 ENCFF881NFR 233 bp overlap
ChIP H1 ENCFF881NFR 279 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 244 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 284 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 266 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 103 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 284 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 284 bp overlap
ChIP HEK293 ENCFF752TCU 218 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 95 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 157 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 191 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 244 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 117 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 189 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 284 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 90 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 284 bp overlap