chr1 : 52,635,407 – 52,636,132
725 bp 93 TFs 1 linked gene
This 725 bp open chromatin element is linked to SHISAL2A and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SHISAL2A 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:52,630,407 – 52,641,132
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
BACH1 2 datasets
ChIP K562 ENCFF419VIM 608 bp overlap
ChIP K562 ENCFF419VIM 408 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 405 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 234 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 511 bp overlap
BRD4 11 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 725 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 264 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 160 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 162 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 193 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 386 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 195 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 230 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 417 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 515 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 725 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 341 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 232 bp overlap
CREB3 1 dataset
ChIP K562 ENCFF985QJI 417 bp overlap
CTCF 2 datasets
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 195 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 312 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 535 bp overlap
DDX20 2 datasets
ChIP K-562 ENCSR382AIB.DDX20.K-562 371 bp overlap
ChIP K562 ENCFF373BEC 361 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 397 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 498 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 361 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 76 bp overlap
FOXA1 1 dataset
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 135 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 227 bp overlap
ChIP DE DE-FOXA2-2 543 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 387 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 451 bp overlap
ChIP DE DE-GATA4-2 725 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 278 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 725 bp overlap
ChIP DE DE-GATA6-2 591 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 344 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 187 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 725 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 710 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 725 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 725 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 152 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 461 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 213 bp overlap
GRHL2 10 datasets
ChIP HBE GSE46194.GRHL2.HBE 264 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 219 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 240 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 205 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 318 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 237 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 246 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 170 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 153 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 242 bp overlap
GTF2A2 2 datasets
ChIP K-562 ENCSR801RPW.GTF2A2.K-562 265 bp overlap
ChIP K562 ENCFF041WRN 524 bp overlap
HDAC8 2 datasets
ChIP K-562 ENCSR835TCD.HDAC8.K-562 336 bp overlap
ChIP K562 ENCFF784HCJ 417 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 297 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 146 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 457 bp overlap
ID3 2 datasets
ChIP K-562 ENCSR005NMT.ID3.K-562 522 bp overlap
ChIP K562 ENCFF170RNI 462 bp overlap
ILK 1 dataset
ChIP K-562 ENCSR648INT.ILK.K-562 269 bp overlap
IRF1 3 datasets
ChIP K-562 ENCSR854MCV.IRF1.K-562 444 bp overlap
ChIP K562 ENCFF277KTJ 561 bp overlap
ChIP K562 ENCFF277KTJ 389 bp overlap
IRF9 2 datasets
ChIP K-562 ENCSR926KTP.IRF9.K-562 222 bp overlap
ChIP K562 ENCFF346PQL 341 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
ChIP HL-60 GSE63484.JMJD1C.HL-60 313 bp overlap
KLF13 1 dataset
ChIP K-562 ENCSR608HVP.KLF13.K-562 335 bp overlap
KLF6 2 datasets
ChIP K-562 ENCSR297CGF.KLF6.K-562 165 bp overlap
ChIP K562 ENCFF948QSP 291 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 258 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 341 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 311 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 268 bp overlap
MITF 5 datasets
ChIP 501-mel GSE137522.MITF.501-mel 413 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 368 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 281 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 432 bp overlap
ChIP K562 ENCFF731XJJ 330 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 571 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 408 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 405 bp overlap
NFE2L1 1 dataset
ChIP K562 ENCFF138UHK 321 bp overlap
NR2C1 2 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 327 bp overlap
ChIP K562 ENCFF568JLK 411 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 505 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 244 bp overlap
NR4A1 2 datasets
ChIP K-562 ENCSR130PDE.NR4A1.K-562 386 bp overlap
ChIP K562 ENCFF998LHF 465 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 213 bp overlap
ChIP K562 ENCFF286KMN 417 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 168 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 194 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 272 bp overlap
PTRF 1 dataset
ChIP K-562 ENCSR126FZN.PTRF.K-562 322 bp overlap
PTTG1 2 datasets
ChIP K-562 ENCSR314BBS.PTTG1.K-562 419 bp overlap
ChIP K562 ENCFF017KRM 357 bp overlap
PYGO2 2 datasets
ChIP K-562 ENCSR410DWC.PYGO2.K-562 222 bp overlap
ChIP K562 ENCFF458IIA 321 bp overlap
RAD51 4 datasets
ChIP GM12878 ENCFF916JXQ 158 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 365 bp overlap
ChIP K-562 ENCSR524BUE.RAD51.K-562 255 bp overlap
ChIP K562 ENCFF133ELP 405 bp overlap
RELA 2 datasets
ChIP K-562 ENCSR772EEN.RELA.K-562 437 bp overlap
ChIP K562 ENCFF892SPR 465 bp overlap
RFX5 2 datasets
ChIP MCF-7 ENCFF983ILY 269 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 250 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 86 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 86 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 210 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 725 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 725 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 662 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 725 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 725 bp overlap
SMAD3 3 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 216 bp overlap
ChIP K-562 ENCSR376XAV.SMAD3.K-562 233 bp overlap
ChIP K562 ENCFF885DQE 265 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 525 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 230 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 274 bp overlap
TBX21 4 datasets
ChIP GM12878 ENCFF951HUW 485 bp overlap
ChIP GM12878 ENCFF951HUW 416 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 616 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 216 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 254 bp overlap
TEAD1 2 datasets
ChIP K-562 ENCSR591ASD.TEAD1.K-562 284 bp overlap
ChIP K562 ENCFF465AQA 297 bp overlap
TEAD2 1 dataset
ChIP K562 ENCFF039ZWC 271 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 317 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 725 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 317 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 246 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 351 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 55 bp overlap
USF1 7 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF201JKA 337 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 255 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 242 bp overlap
USF2 4 datasets
ChIP GM12878 GSE97661.USF2.GM12878 217 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 323 bp overlap
ChIP K562 ENCFF397QGU 265 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 2 datasets
ChIP GM12892 ENCSR000BLT.YY1.GM12892 118 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
ZBTB34 1 dataset
ChIP K562 ENCFF236ZOA 285 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 592 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 548 bp overlap
ZNF215 2 datasets
ChIP K-562 ENCSR699RWG.ZNF215.K-562 234 bp overlap
ChIP K562 ENCFF317MOH 365 bp overlap
ZNF239 1 dataset
ChIP K562 ENCFF703IKI 331 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 78 bp overlap
ChIP K562 ENCFF497GLV 425 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 122 bp overlap
ZNF354B 1 dataset
ChIP K562 ENCFF955JQT 505 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 684 bp overlap
ZNF41 1 dataset
ChIP K-562 ENCSR235PYI.ZNF41.K-562 262 bp overlap
ZNF449 1 dataset
ChIP K562 ENCFF038VEZ 305 bp overlap
ZNF583 1 dataset
ChIP K562 ENCFF879KXH 357 bp overlap
ZNF592 4 datasets
ChIP GM12878 ENCFF818ABS 285 bp overlap
ChIP GM12878 ENCSR173ZVL.ZNF592.GM12878 327 bp overlap
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 562 bp overlap
ChIP K562 ENCFF547OSS 419 bp overlap
ZNF644 1 dataset
ChIP K-562 ENCSR729HVR.ZNF644.K-562 320 bp overlap
ZNF668 1 dataset
ChIP K562 ENCFF112IUE 301 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 457 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 272 bp overlap
ZNF740 2 datasets
ChIP K-562 ENCSR532EMP.ZNF740.K-562 426 bp overlap
ChIP K562 ENCFF447IXE 573 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 534 bp overlap
ZNF830 1 dataset
ChIP K562 ENCFF958IPC 357 bp overlap
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