Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SHISAL2A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SHISAL2A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SHISAL2A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:52,365,194–52,367,305 | 266.8 kb | Distal (>10kb) Multiome | 969 | |
| chr1:52,368,430–52,369,016 | 264.6 kb | Distal (>10kb) Multiome | 340 | |
| chr1:52,403,732–52,405,027 | 228.6 kb | Distal (>10kb) Multiome | 789 | |
| chr1:52,552,164–52,554,055 | 79.8 kb | Distal (>10kb) Multiome | 955 | |
| chr1:52,602,249–52,602,924 | 30.6 kb | Distal (>10kb) Multiome | 267 | |
| chr1:52,632,811–52,633,791 | 114 bp | At TSS Multiome | 269 | |
| chr1:52,635,407–52,636,132 | 2.2 kb | Proximal (<10kb) | 93 | |
| chr1:52,636,615–52,637,124 | 3.4 kb | Proximal (<10kb) | 144 | |
| chr1:52,637,451–52,637,694 | 4.3 kb | Proximal (<10kb) | 178 | |
| chr1:52,662,669–52,663,405 | 29.9 kb | Distal (>10kb) Multiome | 285 | |
| chr1:52,697,629–52,698,936 | 65.2 kb | Distal (>10kb) Multiome | 997 | |
| chr1:52,702,879–52,703,689 | 70.0 kb | Distal (>10kb) Multiome | 872 | |
| chr1:52,726,263–52,726,954 | 93.3 kb | Distal (>10kb) Multiome | 681 | |
| chr1:52,842,499–52,843,778 | 209.6 kb | Distal (>10kb) Multiome | 687 | |
| chr1:52,921,024–52,921,900 | 288.4 kb | Distal (>10kb) Multiome | 693 | |
| chr1:52,926,942–52,927,992 | 294.1 kb | Distal (>10kb) Multiome | 610 |
Genomic view of the SHISAL2A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.