chr2 : 179,051,043 – 179,052,678
1,635 bp 115 TFs 1 linked gene
This 1.6 kb open chromatin element is linked to CCDC141 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CCDC141 906 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:179,046,043 – 179,057,678
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 370 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 167 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 151 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 77 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 386 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 185 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CDX4 2 datasets
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
CEBPB 1 dataset
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 124 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 262 bp overlap
ChIP BLaER1 ENCFF896HSY 485 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 198 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 176 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 352 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 70 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 193 bp overlap
ChIP DE DE-FOXA2-1 1174 bp overlap
ChIP DE DE-FOXA2-2 1169 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 57 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 1198 bp overlap
ChIP DE DE-GATA4-2 1217 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 118 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 1176 bp overlap
ChIP DE DE-GATA6-2 1246 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 516 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 360 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 392 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 334 bp overlap
HOXB13 2 datasets
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 2 datasets
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
JUN 1 dataset
ChIP DE_D1 S08-DE-d1-JUN-exp1 300 bp overlap
KLF1 2 datasets
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF13 1 dataset
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 3 datasets
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 221 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MED1 1 dataset
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 227 bp overlap
MEF2D 1 dataset
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 78 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 204 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 232 bp overlap
MYOD1 5 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 263 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 497 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 227 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 93 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 193 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 335 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 76 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
NANOG 2 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 458 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 69 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 189 bp overlap
NR1H4::RXRA 1 dataset
Motif ES_0h ES_0h-NR1H4RXRA_MA1146.2 13 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif ES_0h ES_0h-NR2F6_MA1539.1 15 bp overlap
NR4A2::RXRA 1 dataset
Motif ES_0h ES_0h-NR4A2RXRA_MA1147.2 13 bp overlap
Nfat5 1 dataset
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 2 datasets
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 187 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 58 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 217 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 336 bp overlap
RBBP4 2 datasets
ChIP SCMC GSE155861.RBBP4.SCMC 63 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 294 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 189 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 165 bp overlap
Rarg 2 datasets
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 191 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 276 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
SNAI1 1 dataset
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 281 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 209 bp overlap
SNAI3 1 dataset
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 283 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 491 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 232 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 388 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP3 1 dataset
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_60h DE_60h-SP8_MA0747.2 11 bp overlap
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 115 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
STAT3 1 dataset
ChIP Th1_IL-6_Mut3 GSE130810.STAT3.Th1_IL-6_Mut3 290 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 137 bp overlap
TBX5 5 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 227 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 227 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 196 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 314 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 75 bp overlap
TCF12 1 dataset
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 133 bp overlap
VEZF1 3 datasets
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 278 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 308 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 240 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF282 2 datasets
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF410 2 datasets
Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 299 bp overlap
ZNF528 2 datasets
ChIP HEK293 GSE76494.ZNF528.HEK293 323 bp overlap
ChIP HEK293T GSE78099.ZNF528.HEK293T 219 bp overlap
ZNF572 1 dataset
ChIP Hep-G2 ENCSR663CTC.ZNF572.Hep-G2 235 bp overlap
ZNF652 1 dataset
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF667 2 datasets
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF707 2 datasets
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF740 2 datasets
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Huangfu Lab · Publications · Resources · Contact