chr2 : 172,429,611 172,430,353
742 bp 101 TFs 3 linked genes
This 742 bp open chromatin element is linked to ENSG00000226963, ITGA6, and PDK1 and is bound by 101 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ENSG00000226963 1.0 kb Proximal Proximity
ITGA6 2.0 kb Proximal Proximity
PDK1 126.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:172,424,611 – 172,435,353
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 326 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 133 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 367 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 356 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 252 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 229 bp overlap
ATF4 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 161 bp overlap
ATF7,NPFF 1 dataset
ChIP HepG2 ENCFF068SVI 403 bp overlap
BCL3 1 dataset
ChIP HepG2 ENCFF641LQV 480 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 377 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 355 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 292 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF521IZR 405 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 229 bp overlap
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 233 bp overlap
ChIP HepG2 ENCFF961RID 297 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 148 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 269 bp overlap
BRD4 8 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 285 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 158 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 158 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 177 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 53 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 333 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 292 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 276 bp overlap
CBFB 2 datasets
ChIP HepG2 ENCFF349HFU 202 bp overlap
ChIP HepG2 ENCFF349HFU 421 bp overlap
CC2D1A 1 dataset
ChIP HepG2 ENCFF930ROQ 411 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 244 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 325 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 323 bp overlap
CTCF 27 datasets
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 252 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 85 bp overlap
ChIP PC-3 ENCFF487TUI 88 bp overlap
ChIP Peyer's patch ENCFF746TCR 183 bp overlap
ChIP RWPE2 ENCFF911IEE 236 bp overlap
ChIP RWPE2 ENCFF911IEE 438 bp overlap
ChIP VCaP ENCFF858YQT 134 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 73 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 60 bp overlap
ChIP brain ENCFF163BBN 102 bp overlap
ChIP chondrocyte ENCFF134ORZ 109 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 113 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 202 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 191 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 56 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 153 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 201 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 154 bp overlap
ChIP heart left ventricle ENCFF440XFJ 240 bp overlap
ChIP myotube ENCFF981UHL 162 bp overlap
ChIP nephron ENCFF589HXU 241 bp overlap
ChIP neural crest cell ENCFF182LWK 64 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 63 bp overlap
ChIP prostate gland ENCFF655GBO 79 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 155 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 169 bp overlap
ChIP transverse colon ENCFF471AZS 61 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 411 bp overlap
EGR1 1 dataset
ChIP HepG2 ENCFF674RQO 255 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 113 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 104 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 159 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 223 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 378 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 313 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 186 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 166 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 200 bp overlap
EZH2 3 datasets
ChIP DND-41 ENCFF187XWF 215 bp overlap
ChIP OCI-LY7 ENCFF395KPU 160 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 181 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 300 bp overlap
FOXA1 3 datasets
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 91 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 492 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 109 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 454 bp overlap
ChIP DE DE-FOXA2-2 502 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 361 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 481 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 545 bp overlap
ChIP DE DE-GATA4-2 568 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 382 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 444 bp overlap
ChIP DE DE-GATA6-2 567 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 474 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 616 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 568 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 555 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 474 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 432 bp overlap
GTF2F1 1 dataset
ChIP HepG2 ENCFF486CCX 301 bp overlap
Gfi1B 1 dataset
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 237 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 249 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 87 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 89 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 478 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 78 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 192 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 282 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 552 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 110 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 296 bp overlap
MAX 4 datasets
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 129 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 132 bp overlap
ChIP MDA-MB-231 GSE127192.MAX.MDA-MB-231 296 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 208 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 206 bp overlap
ChIP HepG2 ENCFF495TSS 430 bp overlap
ChIP RH4 GSE83726.MED1.RH4 112 bp overlap
MITF 1 dataset
ChIP 501-mel GSE61965.MITF.501-mel 205 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR730TBC.MNT.Hep-G2 333 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 167 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 330 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 304 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 246 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 65 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 287 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 179 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 278 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 217 bp overlap
POLR2A 10 datasets
ChIP HCT116 ENCFF508RDJ 465 bp overlap
ChIP Peyer's patch ENCFF767HVN 288 bp overlap
ChIP body of pancreas ENCFF501FEC 195 bp overlap
ChIP body of pancreas ENCFF675RCN 350 bp overlap
ChIP lower leg skin ENCFF687RJC 256 bp overlap
ChIP stomach ENCFF607ZPU 319 bp overlap
ChIP transverse colon ENCFF098HBD 356 bp overlap
ChIP transverse colon ENCFF193UMS 431 bp overlap
ChIP transverse colon ENCFF610RWV 272 bp overlap
ChIP transverse colon ENCFF610RWV 161 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 141 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 272 bp overlap
RAD21 2 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 281 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 73 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RELA 4 datasets
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 110 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 66 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 173 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 181 bp overlap
REST 3 datasets
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 216 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 93 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 141 bp overlap
RUNX1 4 datasets
ChIP 697 GSE138031.RUNX1.697 205 bp overlap
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 249 bp overlap
ChIP MCF-10A_asynchronous GSE121370.RUNX1.MCF-10A_asynchronous 221 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 458 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 188 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 325 bp overlap
SIN3A 1 dataset
ChIP HepG2 ENCFF394WQQ 415 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 422 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 300 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 400 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 220 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 68 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 76 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 239 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 389 bp overlap
SOX6 2 datasets
ChIP HepG2 ENCFF767OCK 453 bp overlap
ChIP HepG2 ENCFF767OCK 581 bp overlap
STAT3 7 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 241 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 112 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 182 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 78 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 84 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 102 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 67 bp overlap
SUPT5H 4 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 383 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 181 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 177 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 185 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 264 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 225 bp overlap
TEAD4 1 dataset
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 54 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 352 bp overlap
TP53 4 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 67 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 316 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 300 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 235 bp overlap
TP63 7 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 189 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 148 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 409 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 132 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 192 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 109 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 126 bp overlap
USF1 8 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 126 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF201JKA 254 bp overlap
ChIP HepG2 ENCFF807KYJ 105 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 163 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 207 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 262 bp overlap
USF2 7 datasets
ChIP Hep-G2 GSE97661.USF2.Hep-G2 382 bp overlap
ChIP Hep-G2 ENCSR145QNL.USF2.Hep-G2 267 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF433IUE 577 bp overlap
ChIP IMR-90 ENCFF438KUN 257 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 203 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 334 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 158 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 474 bp overlap
ZFP64 2 datasets
ChIP HEK293 GSE76494.ZFP64.HEK293 154 bp overlap
ChIP HepG2 ENCFF873EPM 180 bp overlap
ZKSCAN1 3 datasets
ChIP HeLa-S3 ENCSR000ECJ.ZKSCAN1.HeLa-S3 129 bp overlap
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 182 bp overlap
ChIP HepG2 ENCFF578KDY 298 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 183 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 166 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 114 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 362 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 359 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 162 bp overlap
ZNF85 1 dataset
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
ZNF93 1 dataset
ChIP HEK293T GSE78099.ZNF93.HEK293T 194 bp overlap