chr2 : 129,979,605 129,980,135
530 bp 87 TFs 1 linked gene
This 530 bp open chromatin element is linked to RAB6C and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAB6C at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:129,974,605 – 129,985,135
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 530 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 179 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 530 bp overlap
ChIP H1 ENCFF399KAM 530 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 254 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 160 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 475 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 479 bp overlap
BRD4 7 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 347 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 351 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 392 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 240 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 370 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 252 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 374 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 303 bp overlap
CTCF 7 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 406 bp overlap
ChIP chondrocyte ENCFF134ORZ 514 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 370 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 520 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 417 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 333 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 436 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
E2F1 3 datasets
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 398 bp overlap
ChIP MCF-7 ENCFF692OYJ 433 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 315 bp overlap
ELF1 1 dataset
ChIP MCF-7 ENCFF305BNP 391 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 396 bp overlap
ERG 8 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 184 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 381 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 359 bp overlap
ChIP SEM GSE117864.ERG.SEM 320 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 381 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 168 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 168 bp overlap
ESR1 9 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 209 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 339 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 145 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 88 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 363 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 168 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 379 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 229 bp overlap
ETV1 2 datasets
ChIP GIST GSE22441.ETV1.GIST 172 bp overlap
ChIP LNCaP GSE47120.ETV1.LNCaP 100 bp overlap
EZH2 14 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 394 bp overlap
ChIP A673 ENCFF955JRZ 472 bp overlap
ChIP A673 ENCFF955JRZ 164 bp overlap
ChIP H1 ENCFF232NZA 304 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 328 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 392 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 243 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 207 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 497 bp overlap
ChIP keratinocyte ENCFF070STK 476 bp overlap
ChIP keratinocyte ENCFF070STK 392 bp overlap
ChIP neural progenitor cell ENCFF472NFV 530 bp overlap
ChIP neural progenitor cell ENCFF472NFV 175 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 357 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 351 bp overlap
GABPA 1 dataset
ChIP MCF-7 ENCFF735CHO 303 bp overlap
HDAC1 2 datasets
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 230 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 249 bp overlap
HNRNPLL 4 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 183 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 183 bp overlap
ChIP HepG2 ENCFF355PIC 392 bp overlap
ChIP HepG2 ENCFF952XAB 392 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 371 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 358 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 527 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 525 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 209 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 223 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 323 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 283 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 440 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 197 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 134 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 390 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 285 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 283 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 390 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 217 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCFF994GSG 468 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 183 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 218 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 133 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF542NWJ 305 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 254 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 249 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 409 bp overlap
NRF1 2 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 122 bp overlap
ChIP SK-N-SH ENCFF820YTU 151 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 223 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 390 bp overlap
POLR2A 11 datasets
ChIP MCF-7 ENCFF309IKZ 331 bp overlap
ChIP MCF-7 ENCFF411WCU 97 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 465 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 271 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 440 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 391 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 460 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 421 bp overlap
ChIP spleen ENCFF044PYR 216 bp overlap
ChIP spleen ENCFF446ZGT 527 bp overlap
ChIP spleen ENCFF706IUS 527 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 340 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 382 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 425 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 499 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 233 bp overlap
ChIP neural cell ENCFF564MOT 423 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 462 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 346 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 380 bp overlap
RUNX1 6 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 227 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 360 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 227 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 189 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 189 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 186 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 248 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 304 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 259 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 222 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 187 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 256 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 270 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 147 bp overlap
SMC3 2 datasets
ChIP neural cell ENCFF795YGY 438 bp overlap
ChIP neural cell ENCFF795YGY 424 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 233 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 372 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 392 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 160 bp overlap
STAT3 2 datasets
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 243 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 183 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 314 bp overlap
ChIP H1 ENCFF881NFR 502 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 357 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 274 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 530 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 208 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 176 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 280 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 396 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TOP1 1 dataset
ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 50 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 530 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 530 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 251 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 160 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 202 bp overlap
ChIP HEK293 ENCFF524ADK 425 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 530 bp overlap
ChIP HEK293 ENCFF752TCU 530 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 444 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 196 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 381 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCFF968PWB 450 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 464 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 271 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 501 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 513 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 99 bp overlap
ChIP HEK293 ENCFF784SLD 530 bp overlap
ChIP HEK293 ENCFF784SLD 441 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 194 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCFF799ATK 468 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCFF236OPX 431 bp overlap
ZNF449 3 datasets
ChIP HEK293 ENCFF764ZIC 264 bp overlap
ChIP HEK293 ENCFF764ZIC 411 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 340 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 437 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 234 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 195 bp overlap