chr2 : 96,875,469 96,875,792
323 bp 101 TFs 1 linked gene
This 323 bp open chromatin element is linked to SEMA4C and is bound by 101 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SEMA4C 6.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:96,870,469 – 96,880,792
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP K562 ENCFF751HCS 69 bp overlap
AGO1 1 dataset
ChIP K562 ENCFF025NLP 323 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 105 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 189 bp overlap
BRD2 2 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 133 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 166 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 156 bp overlap
BRD4 11 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 287 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 161 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 220 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 323 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 196 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 323 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 136 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 313 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 153 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 287 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 202 bp overlap
CDK9 1 dataset
ChIP A-375_DMSO GSE68052.CDK9.A-375_DMSO 118 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 135 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 215 bp overlap
CHD7 1 dataset
ChIP K-562 ENCSR000AVD.CHD7.K-562 157 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 194 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 317 bp overlap
CTCF 58 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 323 bp overlap
ChIP A673 ENCFF123WOM 323 bp overlap
ChIP A673 ENCFF123WOM 175 bp overlap
ChIP H1 ENCFF764RHO 248 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 265 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 169 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 274 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 170 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 55 bp overlap
ChIP HFFc6 ENCFF005CJI 323 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 125 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 93 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 318 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 136 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 123 bp overlap
ChIP NPC GSE115407.CTCF.NPC 184 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 119 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 199 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 109 bp overlap
ChIP brain ENCFF099ASU 323 bp overlap
ChIP brain ENCFF163BBN 323 bp overlap
ChIP brain ENCFF163BBN 323 bp overlap
ChIP brain ENCFF685VRG 306 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 262 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 114 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 323 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 275 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 286 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 256 bp overlap
ChIP endodermal cell ENCFF471YCZ 323 bp overlap
ChIP endodermal cell ENCFF471YCZ 217 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 276 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 315 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 323 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 156 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 253 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 323 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 323 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 323 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 191 bp overlap
ChIP nephron ENCFF589HXU 323 bp overlap
ChIP nephron ENCFF972IQB 323 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 308 bp overlap
ChIP neural crest cell ENCFF182LWK 323 bp overlap
ChIP neural progenitor cell ENCFF420RBO 323 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 323 bp overlap
ChIP neuron GSE115407.CTCF.neuron 231 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 209 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 317 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 323 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 295 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 323 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 323 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 197 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 218 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 123 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 156 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 323 bp overlap
ChIP BLaER1 ENCFF335XTP 258 bp overlap
ChIP BLaER1 ENCFF460KDD 210 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 216 bp overlap
ERF 1 dataset
ChIP K562 ENCFF626IQJ 104 bp overlap
ETV6 1 dataset
ChIP K562 ENCFF763GEA 292 bp overlap
EZH2 3 datasets
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 243 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 287 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 218 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 323 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 130 bp overlap
GATA2 5 datasets
ChIP K562 ENCFF088XQT 259 bp overlap
ChIP SH-SY5Y ENCFF485YIB 143 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 278 bp overlap
ChIP SK-N-SH ENCFF764OZD 286 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 200 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 220 bp overlap
ChIP NGP GSE65664.GATA3.NGP 140 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 152 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 323 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 137 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 323 bp overlap
HMGN3 2 datasets
ChIP K-562 ENCSR000DOB.HMGN3.K-562 200 bp overlap
ChIP K562 ENCFF083BIJ 252 bp overlap
HNRNPUL1 2 datasets
ChIP K-562 ENCSR296MXW.HNRNPUL1.K-562 323 bp overlap
ChIP K-562 GSE120104.HNRNPUL1.K-562 323 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 96 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 222 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 189 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 147 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 316 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 106 bp overlap
ChIP K-562 ENCSR000AQA.KDM5B.K-562 323 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 219 bp overlap
KLF10 1 dataset
ChIP K562 ENCFF864UDH 236 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 323 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 240 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 146 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 323 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 201 bp overlap
MBD3 2 datasets
ChIP MCF-7 GSE44737.MBD3.MCF-7 173 bp overlap
ChIP MCF-7 GSE44737.MBD3.MCF-7 80 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 169 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 274 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 223 bp overlap
MITF 2 datasets
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 58 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 129 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 323 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 323 bp overlap
ChIP K-562 ENCSR675LRO.MLLT1.K-562 104 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 228 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 323 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 57 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 103 bp overlap
NONO 1 dataset
ChIP K-562 ENCSR886RYH.NONO.K-562 318 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 323 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 323 bp overlap
PHB 1 dataset
ChIP K562 ENCFF225VHG 145 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 254 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 201 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 323 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF137JSF 203 bp overlap
ChIP K562 ENCFF757TUO 253 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 254 bp overlap
ChIP K562 ENCFF648YPL 259 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 187 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 180 bp overlap
PTBP1 2 datasets
ChIP K-562 GSE120104.PTBP1.K-562 323 bp overlap
ChIP K-562 ENCSR948KMB.PTBP1.K-562 165 bp overlap
RB1 2 datasets
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 190 bp overlap
ChIP K-562 ENCSR670JDQ.RB1.K-562 225 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 224 bp overlap
ChIP K562 ENCFF196WTG 241 bp overlap
ChIP K562 ENCFF967GRF 240 bp overlap
RBM22 3 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 208 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 208 bp overlap
ChIP K562 ENCFF420JDS 323 bp overlap
RBM39 2 datasets
ChIP K-562 GSE120104.RBM39.K-562 323 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 323 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 164 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 170 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 235 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 127 bp overlap
SIRT6 1 dataset
ChIP K-562 ENCSR000AUB.SIRT6.K-562 323 bp overlap
SMAD1 2 datasets
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 223 bp overlap
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 79 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 322 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 323 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 314 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 323 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 316 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 260 bp overlap
SNRNP70 3 datasets
ChIP K-562 GSE120104.SNRNP70.K-562 58 bp overlap
ChIP K-562 ENCSR754ZHU.SNRNP70.K-562 323 bp overlap
ChIP K-562 GSE120104.SNRNP70.K-562 154 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 194 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 141 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 199 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF254RJL 116 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 316 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 323 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 323 bp overlap
ChIP K562 ENCFF727PXG 162 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 294 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 210 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 210 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 253 bp overlap
ZBTB7A 4 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 176 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 313 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 140 bp overlap
ChIP K562 ENCFF579ZGM 323 bp overlap
ZNF224 2 datasets
ChIP K562 ENCFF941VPS 191 bp overlap
ChIP K562 ENCFF941VPS 217 bp overlap
ZNF263 10 datasets
ChIP HEK293 ENCFF336CWQ 323 bp overlap
ChIP HEK293 ENCFF336CWQ 323 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 201 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 196 bp overlap
ChIP HepG2 ENCFF626SSV 309 bp overlap
ChIP HepG2 ENCFF626SSV 97 bp overlap
ChIP K562 ENCFF640RNA 323 bp overlap
ChIP K562 ENCFF640RNA 122 bp overlap
ChIP K562 ENCFF650LPZ 269 bp overlap
ChIP WTC11 ENCFF893RTM 274 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 323 bp overlap
ZNF696 1 dataset
ChIP K562 ENCFF494DFA 54 bp overlap
ZNF717 1 dataset
ChIP K562 ENCFF839EKA 225 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF913GVQ 131 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 193 bp overlap