chr2 : 85,065,068 – 85,065,530
462 bp 87 TFs 1 linked gene
This 462 bp open chromatin element is linked to LINC01964 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01964 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:85,060,068 – 85,070,530
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 196 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 173 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 462 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 338 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 228 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 212 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 199 bp overlap
BRD4 2 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 167 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 136 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 210 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 272 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 205 bp overlap
CHD4 3 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 356 bp overlap
ChIP RH5 GSE155861.CHD4.RH5 275 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 461 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 222 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 235 bp overlap
CTCF 4 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 182 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 183 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 147 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 235 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 79 bp overlap
ChIP BLaER1 ENCFF335XTP 329 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 209 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 277 bp overlap
ChIP SK-N-SH ENCFF829RWA 219 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 108 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 166 bp overlap
ESR1 5 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 331 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 202 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 67 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 251 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 181 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 136 bp overlap
EZH2 3 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 167 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 462 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 462 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 236 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 246 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 262 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 292 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 246 bp overlap
ChIP SK-N-SH ENCFF764OZD 256 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 240 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 165 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 122 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 111 bp overlap
ChIP SH-SY5Y ENCFF475HYF 268 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 210 bp overlap
ChIP SK-N-SH ENCFF040SSB 94 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 167 bp overlap
ChIP DE DE-GATA6-2 326 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 462 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 435 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 462 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 462 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 301 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 269 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 339 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 367 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 196 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 220 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 164 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 449 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 165 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 85 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 333 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 267 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 348 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 133 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 189 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 176 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 74 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 55 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 78 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 462 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 462 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 123 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 118 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 189 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 462 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 376 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 396 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 132 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 251 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 462 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 231 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 181 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 244 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 448 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 328 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 209 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 440 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 234 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 219 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 319 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 462 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 396 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 439 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 462 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 408 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 410 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 192 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 200 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 330 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 289 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 425 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 276 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 374 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 421 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 406 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 375 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 144 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 244 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 212 bp overlap
SETX 1 dataset
ChIP A-549_Influenza_PR8_NS1 GSE52936.SETX.A-549_Influenza_PR8_NS1 133 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 451 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 393 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 122 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 181 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 409 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 451 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 360 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 441 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 439 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 406 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 333 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 211 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 265 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 50 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 142 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 153 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 353 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 228 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 212 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 208 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 227 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 191 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 300 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 218 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 62 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP SK-N-SH ENCFF147AHB 226 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 274 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 414 bp overlap
TCF4 2 datasets
ChIP SK-N-SH ENCFF270OWF 270 bp overlap
ChIP SK-N-SH ENCFF270OWF 67 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 133 bp overlap
ChIP H1 ENCFF778PAX 231 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 133 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 173 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 228 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 249 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 247 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 210 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 233 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 239 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 239 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 354 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 201 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 349 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 279 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 425 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 234 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 161 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 289 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 156 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 253 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 181 bp overlap
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