chr2 : 60,568,962 60,569,281
319 bp 117 TFs 0 linked genes
This 319 bp open chromatin element has no linked target genes and is bound by 117 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:60,563,962 – 60,574,281
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 166 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 292 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 153 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 250 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 150 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 214 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 317 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 301 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 166 bp overlap
BRD4 4 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 319 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 251 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 275 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 173 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 163 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 52 bp overlap
ChIP A-549 ENCSR616MOB.CBX8.A-549 114 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 164 bp overlap
CTCF 4 datasets
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 116 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 143 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 63 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 88 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 316 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 300 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 111 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 159 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 158 bp overlap
EZH2 20 datasets
ChIP DND-41 ENCFF187XWF 292 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 270 bp overlap
ChIP H1 ENCFF232NZA 319 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 319 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 319 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 266 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 319 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 319 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 313 bp overlap
ChIP T98G GSE112240.EZH2.T98G 173 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 197 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 227 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 319 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 161 bp overlap
ChIP hepatocyte ENCFF552DZB 169 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 319 bp overlap
ChIP keratinocyte ENCFF070STK 241 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 319 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 135 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 71 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 272 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 250 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 88 bp overlap
FOXA1 1 dataset
ChIP liver ERP002306.FOXA1.liver 143 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 161 bp overlap
GLIS2 3 datasets
ChIP HEK293 ENCFF446EIF 319 bp overlap
ChIP HEK293 ENCFF446EIF 139 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 228 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 222 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 206 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 63 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 319 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 208 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 180 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 247 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 93 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 170 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 203 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 216 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 142 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 319 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 231 bp overlap
MAX 2 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 157 bp overlap
MED26 2 datasets
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 276 bp overlap
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 77 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 144 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 294 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 189 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 300 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 305 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 236 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 218 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 64 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 278 bp overlap
MYC 5 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
ChIP NB69 GSE138295.MYC.NB69 319 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 65 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 75 bp overlap
MYCN 8 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 244 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 319 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 259 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 129 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 221 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 319 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 232 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 237 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 231 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 147 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 97 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 266 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 319 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 285 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 312 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 247 bp overlap
PKNOX1 3 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 72 bp overlap
ChIP HEK293T ENCFF174WDB 251 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 229 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 87 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 142 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 207 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 104 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 72 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 214 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 206 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 102 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 146 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 132 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 193 bp overlap
RNF2 6 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 286 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 319 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 176 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 319 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 293 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 316 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 156 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 185 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 60 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 269 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 111 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 176 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 259 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 228 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 165 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 319 bp overlap
ChIP H1 ENCFF881NFR 319 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 69 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 199 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TFE3 1 dataset
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
USF1 18 datasets
ChIP A-549 ENCSR000BPV.USF1.A-549 132 bp overlap
ChIP A-549 ENCSR000BHX.USF1.A-549 140 bp overlap
ChIP A-549 ENCSR000BJB.USF1.A-549 124 bp overlap
ChIP GM12878 ENCFF880HJL 208 bp overlap
ChIP GM12878 ENCSR000BGI.USF1.GM12878 160 bp overlap
ChIP H1 ENCFF090WVU 180 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 205 bp overlap
ChIP HCT116 ENCFF330PYP 263 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF201JKA 154 bp overlap
ChIP HepG2 ENCFF807KYJ 187 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 117 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 178 bp overlap
ChIP SK-N-SH ENCFF967PDP 246 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 231 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 174 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 270 bp overlap
ChIP WTC11 ENCFF699QGS 298 bp overlap
USF2 11 datasets
ChIP A549 ENCFF343KII 277 bp overlap
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 253 bp overlap
ChIP H1 ENCFF434EDF 205 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 206 bp overlap
ChIP IMR-90 ENCFF438KUN 189 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 167 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 188 bp overlap
ChIP K562 ENCFF397QGU 233 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 176 bp overlap
ChIP WTC11 ENCFF139JAW 203 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 72 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 319 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 319 bp overlap
ChIP HEK293 ENCFF524ADK 77 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 169 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 134 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 319 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 319 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 246 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 218 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 175 bp overlap
ZNF501 1 dataset
ChIP HEK293 ENCFF066RAQ 97 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 170 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 229 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCFF096ELQ 50 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 319 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 55 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 319 bp overlap