chr2 : 47,687,986 47,688,838
852 bp 108 TFs 4 linked genes
This 852 bp open chromatin element is linked to 4 target genes and is bound by 108 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
MSH6 94.8 kb Distal Multiome
KCNK12 117.3 kb Distal Multiome
FBXO11 218.2 kb Distal Multiome
MSH2 285.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:47,682,986 – 47,693,838
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 328 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 343 bp overlap
AR 4 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 239 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 67 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 102 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 81 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 194 bp overlap
BRD4 6 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 198 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 234 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 216 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 182 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 413 bp overlap
ChIP SEM GSE83671.BRD4.SEM 520 bp overlap
BRD9 1 dataset
ChIP Mel270 GSE124720.BRD9.Mel270 81 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 221 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBFB 3 datasets
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 167 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 254 bp overlap
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 196 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 292 bp overlap
CBX5 2 datasets
ChIP GM12878 ENCFF542UDC 142 bp overlap
ChIP GM12878 ENCSR372GIN.CBX5.GM12878 82 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 242 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 146 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 353 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 212 bp overlap
CTCF 3 datasets
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 103 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 334 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 181 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF093OYK 261 bp overlap
ChIP BLaER1 ENCFF274GAT 410 bp overlap
ChIP BLaER1 ENCFF335XTP 290 bp overlap
ChIP BLaER1 ENCFF364PUR 269 bp overlap
ChIP BLaER1 ENCFF798NMV 282 bp overlap
ELF1 7 datasets
ChIP A-549 GSE122203.ELF1.A-549 106 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 179 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 183 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 73 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 127 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 233 bp overlap
ChIP SEM GSE117864.ELF1.SEM 125 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 248 bp overlap
EP300 1 dataset
ChIP 697 GSE138031.EP300.697 127 bp overlap
ERG 5 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 295 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 230 bp overlap
ChIP SEM GSE117864.ERG.SEM 248 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 237 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 176 bp overlap
ESR1 11 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 277 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 193 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 172 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 195 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 133 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 321 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 226 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 250 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 282 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 343 bp overlap
ETS1 8 datasets
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 125 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 125 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 85 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 199 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 122 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 85 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 199 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 165 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 160 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 231 bp overlap
EZH2 2 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 197 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 259 bp overlap
FLI1 4 datasets
ChIP SEM GSE117864.FLI1.SEM 163 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 245 bp overlap
ChIP UAE GSE23730.FLI1.UAE 134 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 215 bp overlap
FOXA1 1 dataset
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 75 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 196 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 333 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 98 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 70 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 269 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 399 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 271 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 329 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 251 bp overlap
HSF1 1 dataset
ChIP BT-20 GSE38901.HSF1.BT-20 184 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 211 bp overlap
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 210 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 253 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 178 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 206 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 570 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 455 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 311 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 181 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 114 bp overlap
KMT2A 4 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 423 bp overlap
ChIP L826 GSE83671.KMT2A.L826 317 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 302 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 397 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 203 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 160 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 133 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 145 bp overlap
MECOM 4 datasets
ChIP SKH1 GSE102697.MECOM.SKH1 158 bp overlap
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 233 bp overlap
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 173 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 222 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 404 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 132 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 260 bp overlap
MYB 4 datasets
ChIP DU528 GSE94000.MYB.DU528 289 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 207 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 258 bp overlap
ChIP SEM GSE117864.MYB.SEM 345 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 203 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 175 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 211 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 137 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 280 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 227 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 280 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 268 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 294 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 180 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 325 bp overlap
POLR2A 1 dataset
ChIP HL-60 ENCFF321XKE 251 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 202 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 473 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 233 bp overlap
RBPJ 4 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP HCC1599 GSE116871.RBPJ.HCC1599 335 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 325 bp overlap
ChIP MDA-MB-157_GSI GSE116868.RBPJ.MDA-MB-157_GSI 205 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 238 bp overlap
ChIP BJAB GSE117250.RELA.BJAB 142 bp overlap
REST 1 dataset
ChIP HL-60 ENCFF589LOF 391 bp overlap
RNF2 2 datasets
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 275 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 254 bp overlap
RUNX1 17 datasets
ChIP 697 GSE138031.RUNX1.697 246 bp overlap
ChIP AML_bone-marrow GSE111821.RUNX1.AML_bone-marrow 239 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 303 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 250 bp overlap
ChIP Jurkat GSE29180.RUNX1.Jurkat 232 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 230 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 181 bp overlap
ChIP K-562 ENCSR588AKU.RUNX1.K-562 114 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 297 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 225 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 248 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 248 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 297 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 287 bp overlap
ChIP NALM-6 GSE109377.RUNX1.NALM-6 236 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 142 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 182 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 173 bp overlap
RUNX2 3 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 254 bp overlap
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 172 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 285 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 411 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 284 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 284 bp overlap
SIX2 1 dataset
ChIP MCF-7 GSE117145.SIX2.MCF-7 303 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 358 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 528 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 632 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 364 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 212 bp overlap
SMARCA4 2 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 209 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 263 bp overlap
SP1 1 dataset
ChIP A-375_DMSO GSE68044.SP1.A-375_DMSO 145 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
STAT3 5 datasets
ChIP A-137 GSE85579.STAT3.A-137 193 bp overlap
ChIP A139 GSE85579.STAT3.A139 230 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 172 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 103 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 222 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 221 bp overlap
TCF12 2 datasets
ChIP ME-1 GSE46044.TCF12.ME-1 232 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 107 bp overlap
TCF3 2 datasets
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 372 bp overlap
ChIP SEM GSE85988.TCF3.SEM 283 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 210 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP63 2 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 179 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 126 bp overlap
TRIM28 4 datasets
ChIP WIBR3 GSE84382.TRIM28.WIBR3 150 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 246 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 274 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 270 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 184 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 185 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 408 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 162 bp overlap
ChIP HepG2 ENCFF106ELT 404 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 223 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF605 1 dataset
ChIP HepG2 ENCFF640NFJ 234 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 484 bp overlap
ZNF700 2 datasets
ChIP K-562 ENCSR959BQO.ZNF700.K-562 177 bp overlap
ChIP K562 ENCFF657OXY 234 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 275 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap